Gene omics information

Query gene ID	Zm.6192.1.S1_a_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	88.2	Zm.6192.1.S1_a_at	CK394758	-	-	5e-1	At3g52990	pyruvate kinase, putative	S.X.	H.G.	Please select
0.49	61.9	Zm.9040.2.A1_a_at	BM339006	hypothetical protein LOC100279670	-	3e-1	At1g71480	nuclear transport factor 2 (NTF2) family protein	S.X.	H.G.	Please select
0.48	61.3	Zm.3829.1.S1_at	BM335816	-	-	1e-15	At1g23310	GGT1 (GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE)	S.X.	H.G.	Please select
0.41	49.7	Zm.897.1.A1_at	CD436499	-	-	7e-1	At5g03995	unknown protein	S.X.	H.G.	Please select
0.39	45.6	Zm.17822.1.A1_at	CO521652	hypothetical protein LOC100193034	-	6e+0	At4g14104	unknown protein	S.X.	H.G.	Please select
0.35	38.9	Zm.2879.1.S1_at	AF527609.1	chromdomain-containing protein CRD101	-	2e-1	At3g30220	unknown protein	S.X.	H.G.	Please select
0.34	37.2	Zm.8997.1.A1_at	AY106532.1	hypothetical protein LOC100272754	-	2e-9	At5g48810	CB5-D (CYTOCHROME B5 ISOFORM D)	S.X.	H.G.	Please select
0.32	33.4	Zm.5754.1.A1_at	CF021134	metallothionein-like protein 1	-	7e-1	At1g07610	MT1C	S.X.	H.G.	Please select
0.29	28.1	Zm.5680.1.A1_at	CF629045	monocopper oxidase	-	4e+0	At5g58780	dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative	S.X.	H.G.	Please select
0.29	28.1	Zm.8653.1.A1_at	BM075070	hypothetical protein LOC100276878	-	5e+0	At2g31335	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.8	98.1	GSM205373	Mo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
8.0	98.0	GSM205425	B73 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
7.9	97.9	GSM205369	Mo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
7.6	97.9	GSM205421	B73 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
7.5	97.8	GSM205371	Mo17xB73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
7.0	97.7	GSM205375	Mo17xB73 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
6.4	97.5	GSM205370	B73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
6.4	97.5	GSM205429	B73xMo17 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
5.7	97.2	GSM205433	B73 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
5.7	97.2	GSM205365	Mo17 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	3e-16	85	Zm.7665.1.A1_at	CF634198	-	-	5e-2	At4g30160	VLN4 (ARABIDOPSIS THALIANA VILLIN 4)	C.G.	S.X.	Please select
0.07	3e-16	85	Zm.7665.1.S1_at	AY108375.1	-	-	2e-1	At3g13782	NAP1	C.G.	S.X.	Please select
0.03	1e-5	50	Zm.4542.1.A1_at	AI734680	-	-	1e+0	At3g44783	unknown protein	C.G.	S.X.	Please select
0.03	1e-5	50	Zm.16593.7.S1_a_at	CF048657	Hypothetical protein LOC100192949	-	1e-3	At3g02080	40S ribosomal protein S19 (RPS19A)	C.G.	S.X.	Please select
0.03	1e-5	50	Zm.12105.1.A1_at	BM380148	ATP-dependent transporter YFL028C	-	2e-6	At1g03905	ABC transporter family protein	C.G.	S.X.	Please select
0.03	1e-5	50	Zm.10329.1.S1_at	BQ163458	hypothetical protein LOC100279503	-	1e+0	At5g20500	glutaredoxin, putative	C.G.	S.X.	Please select
0.02	6e-5	48	Zm.6933.1.A1_at	BI679493	hypothetical protein LOC100274350	-	3e+0	At1g33280	ANAC015 (Arabidopsis NAC domain containing protein 15)	C.G.	S.X.	Please select
0.02	6e-5	48	Zm.6927.2.A1_a_at	CF038958	hypothetical protein LOC100194137	-	1e-20	At5g05080	UBC22 (ubiquitin-conjugating enzyme 22)	C.G.	S.X.	Please select
0.02	6e-5	48	Zm.6927.2.S1_at	CF038958	Hypothetical protein LOC100194137	-	1e-20	At5g05080	UBC22 (ubiquitin-conjugating enzyme 22)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-1	36	Arabidopsis thaliana	At3g52990	824465	pyruvate kinase, putative	F:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:response to cadmium ion, glycolysis;C:membrane;BOMPFA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	7e-4	46	Glycine max	GmaAffx.78774.1.S1_at	BI702210	-	-	7e-12	At4g30160	VLN4 (ARABIDOPSIS THALIANA VILLIN 4)	C.G.	S.X.	Please select
0.07	7e-11	67	Hordeum vulgare	Contig6768_at	Contig6768	-	-	4e-4	At4g30160	VLN4 (ARABIDOPSIS THALIANA VILLIN 4)	C.G.	S.X.	Please select
0.15	4e-46	186	Oryza sativa	Os08g0240800	AK073518.1	-	Villin 4	6e-15	At4g30160	VLN4 (ARABIDOPSIS THALIANA VILLIN 4)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	1e-5	52	Populus trichocarpa	Ptp.4715.1.A1_a_at	CV248806	hypothetical protein	-	9e-6	At5g57320	villin, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.48	3e-163	575	Triticum aestivum	TaAffx.31119.1.S1_at	CA618471	-	-	4e+0	At4g02360	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Vitis vinifera	1609011_at	CB347057	-	-	4e+0	At5g10380	RING1	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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