Gene omics information

Query gene ID	Zm.6113.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	94.0	Zm.6113.1.A1_at	CF630251	-	-	7e-2	At4g22745	MBD1	S.X.	H.G.	Please select
0.67	85.8	Zm.3938.1.A1_at	CB350990	-	-	2e+0	At5g63310	NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2)	S.X.	H.G.	Please select
0.60	77.8	Zm.3936.1.S1_at	AY112116.1	hypothetical protein LOC100275702	-	1e+0	At3g19900	unknown protein	S.X.	H.G.	Please select
0.57	75.1	Zm.393.1.S1_at	U41466.1	glossy15	-	3e-7	At5g67180	AP2 domain-containing transcription factor, putative	S.X.	H.G.	Please select
0.44	55.7	Zm.13232.1.S1_at	CA452744	tyrosine/DOPA decarboxylase 2	-	9e-1	At2g04630	NRPB6B	S.X.	H.G.	Please select
0.19	12.8	Zm.5823.1.A1_at	CO520297	hypothetical protein LOC100194104	-	2e-10	At1g14310	haloacid dehalogenase-like hydrolase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.9	95.7	GSM202299	Mo17xB73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.9	95.7	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.7	95.4	GSM202306	Mo17xB73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.6	95.2	GSM205365	Mo17 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.4	94.9	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.4	94.9	GSM202319	Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.3	94.7	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.3	94.7	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.3	94.7	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.2	94.5	GSM205369	Mo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.63	3e-107	389	Zm.6113.2.S1_at	CD437021	hypothetical protein LOC100276316	-	7e-1	At4g22745	MBD1	C.G.	S.X.	Please select
0.04	2e-9	63	Zm.13794.1.A1_at	AY104961.1	hypothetical protein LOC100278526	-	7e-1	At5g53280	PDV1 (PLASTID DIVISION1)	C.G.	S.X.	Please select
0.04	2e-9	63	Zm.13794.1.S1_at	AY104961.1	-	-	7e-1	At5g53280	PDV1 (PLASTID DIVISION1)	C.G.	S.X.	Please select
0.01	5e-1	36	ZmAffx.1376.1.S1_s_at	40794996-51	-	-	0	Atmg00080	-	C.G.	S.X.	Please select
0.01	5e-1	36	Zm.7422.1.A1_at	CO525742	anthocyanidin 3-O-glucosyltransferase	-	2e+0	At2g01250	60S ribosomal protein L7 (RPL7B)	C.G.	S.X.	Please select
0.01	5e-1	36	Zm.4056.1.A1_at	CA403994	hypothetical protein LOC100192464	-	3e+0	At4g01080	unknown protein	C.G.	S.X.	Please select
0.01	5e-1	36	Zm.16501.1.S1_at	AY108566.1	-	-	0	Atmg00080	-	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.7176.1.A1_a_at	CF629363	-	-	5e+0	At5g05210	nucleolar matrix protein-related	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.7176.1.A1_at	CF629363	-	-	5e+0	At5g05210	nucleolar matrix protein-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	7e-2	40	Arabidopsis thaliana	At4g22745	828371	MBD1	Protein containing methyl-CpG-binding domain.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	6e+0	34	Glycine max	PsAffx.psML002xE22f_at	PsAffx.psML002xE22f	-	-	9e-1	At3g15250	unknown protein	C.G.	S.X.	Please select
0.13	4e-14	79	Hordeum vulgare	Contig6080_at	Contig6080	-	-	2e+0	At1g35210	unknown protein	C.G.	S.X.	Please select
0.08	6e-16	87	Oryza sativa	Os02g0745600	AK103517.1	-	Conserved hypothetical protein	4e+0	Atmg00650	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.01	2e+0	36	Populus trichocarpa	Ptp.4180.1.A1_a_at	CV271588	-	-	6e-6	At3g20260	structural constituent of ribosome	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.12	2e-11	71	Triticum aestivum	Ta.10039.1.S1_at	BQ168415	-	-	3e+0	At5g05280	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.01	3e-1	36	Vitis vinifera	1617240_at	CF510707	-	-	4e-1	At2g40020	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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