Gene omics information

Query gene ID	Zm.6103.3.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.6103.3.S1_at	AI668289	-	-	8e-1	At1g21010	unknown protein	S.X.	H.G.	Please select
0.80	94.0	Zm.16462.1.A1_at	AY347711.1	Xaa-His dipeptidase; X-His dipeptidase; beta-alanyl-histidine dipeptidase	-	7e+0	At5g57685	AtGDU3 (Arabidopsis thaliana GLUTAMINE DUMPER 3)	S.X.	H.G.	Please select
0.77	92.1	Zm.6915.1.S1_at	AW256266	hypothetical protein LOC100280116	-	5e-1	At5g64160	unknown protein	S.X.	H.G.	Please select
0.63	81.1	Zm.12244.1.A1_at	AY105130.1	-	-	4e-8	At2g37500	arginine biosynthesis protein ArgJ family	S.X.	H.G.	Please select
0.56	74.4	Zm.6916.1.S1_at	AW067358	hypothetical protein LOC100273981	-	9e-13	At5g66750	CHR1 (CHROMATIN REMODELING 1)	S.X.	H.G.	Please select
0.47	59.9	Zm.3743.2.S1_at	AY109746.1	-	-	2e+0	At5g04045	Expressed protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
34.3	99.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.3	99.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.4	99.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.9	99.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.1	99.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.6	99.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.1	99.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.0	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4	98.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	753	Zm.6103.3.A1_at	AI668289	-	-	8e-1	At1g21010	unknown protein	C.G.	S.X.	Please select
0.14	9e-11	65	Zm.8814.1.A1_at	BM336882	-	-	5e+0	At1g10095	protein prenyltransferase	C.G.	S.X.	Please select
0.03	4e-4	44	Zm.8031.1.A1_at	BQ539285	-	-	9e-15	At1g08720	EDR1 (ENHANCED DISEASE RESISTANCE 1)	C.G.	S.X.	Please select
0.03	4e-4	44	Zm.6103.2.S1_a_at	AY104019.1	UBA and UBX domain-containing protein /// UBA and UBX domain-containing protein	-	2e-1	At4g04210	PUX4	C.G.	S.X.	Please select
0.03	4e-4	44	Zm.6103.2.S1_at	AY104019.1	UBA and UBX domain-containing protein	-	2e-1	At4g04210	PUX4	C.G.	S.X.	Please select
0.02	9e-2	36	Zm.6103.1.A1_at	CA403951	UBA and UBX domain-containing protein	-	2e-4	At4g04210	PUX4	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.661.2.A1_at	AF290415.1	chloroplast RNA splicing1	-	6e-2	At3g18390	EMB1865 (embryo defective 1865)	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.661.2.S1_a_at	CF625277	chloroplast RNA splicing1	-	6e-2	At3g18390	EMB1865 (embryo defective 1865)	C.G.	S.X.	Please select
0.04	3e-1	34	Zm.4434.1.S1_at	CA402082	-	-	2e+0	At4g10925	F-box family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	8e-1	34	Arabidopsis thaliana	At1g21010	838695	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	4e+0	32	Glycine max	GmaAffx.75675.1.A1_at	AW351172	-	-	6e-1	At5g11120	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	Contig4798_at	Contig4798	-	-	3e-1	At2g45050	zinc finger (GATA type) family protein	C.G.	S.X.	Please select
0.04	2e+0	34	Oryza sativa	OsAffx.22447.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e+0	32	Populus trichocarpa	PtpAffx.48257.1.A1_at	DN490669	hypothetical protein	-	2e-4	At5g64020	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	5e-2	38	Triticum aestivum	TaAffx.105257.1.S1_at	CA737137	-	-	1e-3	At2g34710	PHB (PHABULOSA)	C.G.	S.X.	Please select
0.05	4e+0	30	Vitis vinifera	1611544_at	CA814476	-	-	2e+0	At5g16510	reversibly glycosylated polypeptide, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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