Gene omics information

Query gene ID	Zm.6083.2.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.6083.2.S1_at	AF457979.1	-	-	1e-33	At5g23250	succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative	S.X.	H.G.	Please select
0.60	77.8	Zm.12734.1.A1_at	CA399120	-	-	4e-2	At1g53910	RAP2.12	S.X.	H.G.	Please select
0.40	48.5	Zm.6512.1.A1_at	BG266026	-	-	1e+0	At3g48840	nucleic acid binding / nucleotide binding	S.X.	H.G.	Please select
0.23	18.6	Zm.6101.1.A1_at	AY108448.1	hypothetical protein LOC100273521	-	1e-2	At4g31580	SRZ-22	S.X.	H.G.	Please select
0.20	14.2	Zm.6763.4.S1_a_at	BG841872	hypothetical protein LOC100279574 /// ribulose bisphosphate carboxylase small subunit1	-	8e-6	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	S.X.	H.G.	Please select
0.13	6.8	Zm.17246.1.S1_at	AY466159.1	DEAD box RNA helicase1	-	5e-12	At5g63120	ethylene-responsive DEAD box RNA helicase, putative (RH30)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
33.1	99.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.1	99.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.6	99.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.3	99.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.0	99.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.7	99.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.3	99.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.7	99.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.3	99.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.99	0	944	Zm.6083.2.A1_a_at	AF457979.1	hypothetical protein LOC100216609	-	1e-33	At5g23250	succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative	C.G.	S.X.	Please select
0.24	1e-140	498	Zm.6083.1.A1_at	CF629354	Hypothetical protein LOC100216609	-	1e-61	At5g08300	succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative	C.G.	S.X.	Please select
0.04	4e-1	34	ZmAffx.441.1.A1_s_at	AI676998	-	-	3e+0	At3g54000	-	C.G.	S.X.	Please select
0.04	4e-1	34	ZmAffx.441.1.A1_at	AI676998	-	-	3e+0	At3g54000	-	C.G.	S.X.	Please select
0.04	4e-1	34	ZmAffx.441.1.S1_at	AI676998	-	-	3e+0	At3g54000	-	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.5083.3.A1_at	CF635089	dnaJ protein	-	2e-26	At3g44110	ATJ3	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.14419.1.A1_s_at	U76259.1	elongation factor 1-alpha	-	0	At1g07940	elongation factor 1-alpha / EF-1-alpha	C.G.	S.X.	Please select
0.04	7e+0	30	ZmAffx.334.1.A1_at	AI670520	-	-	1e+1	At3g23440	EDA6 (EMBRYO SAC DEVELOPMENT ARREST 6)	C.G.	S.X.	Please select
0.04	7e+0	30	ZmAffx.334.1.S1_at	AI670520	-	-	1e+1	At3g23440	EDA6 (EMBRYO SAC DEVELOPMENT ARREST 6)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.29	1e-33	143	Arabidopsis thaliana	At5g23250	832389	succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative	F:succinate-CoA ligase (ADP-forming) activity, succinate-CoA ligase (GDP-forming) activity, binding, ATP citrate synthase activity, catalytic activity;P:metabolic process;C:mitochondrion;OBMAFP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.19	2e-24	113	Glycine max	GmaAffx.1301.39.S1_at	BI785728	-	-	3e-31	At5g23250	succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative	C.G.	S.X.	Please select
0.32	7e-102	369	Hordeum vulgare	Contig4268_s_at	Contig4268	-	-	3e-49	At5g23250	succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative	C.G.	S.X.	Please select
0.30	5e-112	404	Oryza sativa	Os.38799.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.30	2e-39	163	Populus trichocarpa	PtpAffx.11524.2.S1_a_at	CV262907	hypothetical protein	-	6e-59	At5g23250	succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.29	2e-101	369	Triticum aestivum	Ta.5528.1.S1_at	CA601949	-	-	1e-48	At5g23250	succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative	C.G.	S.X.	Please select
0.25	4e-28	123	Vitis vinifera	1612015_at	CF215100	hypothetical protein LOC100261494	-	4e-98	At5g08300	succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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