Gene omics information

Query gene ID	Zm.6079.1.S1_at
Gene name	ribosomal protein L25
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.6079.1.S1_at	BM268227	ribosomal protein L25	-	1e-53	At2g39460	RPL23AA (RIBOSOMAL PROTEIN L23AA)	S.X.	H.G.	Please select
0.71	88.2	Zm.6614.1.A1_at	CO533019	coronatine-insensitive protein 1	-	1e+0	At2g26030	F-box family protein	S.X.	H.G.	Please select
0.50	65.7	Zm.5833.1.A1_at	CA398697	adenylate kinase	-	1e-2	At5g47840	AMK2 (Adenosine monophosphate kinase)	S.X.	H.G.	Please select
0.50	65.7	Zm.7127.1.A1_at	BM266653	nonspecific lipid-transfer protein	-	8e+0	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	S.X.	H.G.	Please select
0.47	59.9	Zm.4061.1.S1_at	AI834355	-	-	3e+0	At3g25030	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.29	28.1	Zm.221.1.A1_at	U28376.1	calcium-dependent protein kinase	-	4e-25	At3g20410	CPK9 (calmodulin-domain protein kinase 9)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.5	92.6	GSM205421	B73 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
2.3	91.7	GSM205429	B73xMo17 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
2.1	90.8	GSM205425	B73 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
2.1	90.8	GSM205423	B73xMo17 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
2.1	90.8	GSM205433	B73 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
2.0	90.2	GSM206295	Lower pulvinus 5 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.0	90.2	GSM202296	B73xMo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
1.9	89.6	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
1.8	88.9	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
1.8	88.9	GSM206290	Upper pulvinus 15 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.89	0	1285	Zm.6079.1.S1_x_at	BM268227	ribosomal protein L25	-	1e-53	At2g39460	RPL23AA (RIBOSOMAL PROTEIN L23AA)	C.G.	S.X.	Please select
0.50	0	747	Zm.6079.2.S1_at	CO533635	60S ribosomal protein L23a	-	2e-62	At2g39460	RPL23AA (RIBOSOMAL PROTEIN L23AA)	C.G.	S.X.	Please select
0.49	0	684	Zm.6465.1.A1_at	CF014211	60S ribosomal protein L23a	-	2e-43	At2g39460	RPL23AA (RIBOSOMAL PROTEIN L23AA)	C.G.	S.X.	Please select
0.02	3e-3	42	Zm.6225.1.A1_at	CB251995	hypothetical protein LOC100274530	-	1e-10	At1g23290	RPL27AB	C.G.	S.X.	Please select
0.06	1e-2	40	Zm.9080.1.A1_at	BM266417	-	-	2e-2	At3g55280	RPL23AB (RIBOSOMAL PROTEIN L23AB)	C.G.	S.X.	Please select
0.02	1e-2	40	Zm.6905.1.A1_a_at	AF461814.1	histone1a	-	6e-1	At4g04620	ATG8B (autophagy 8b)	C.G.	S.X.	Please select
0.03	5e-2	38	Zm.12680.1.A1_at	BU571585	hypothetical protein LOC100217223	-	1e-15	At5g11880	diaminopimelate decarboxylase, putative / DAP carboxylase, putative	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.6874.2.S1_a_at	CF637577	hypothetical protein LOC100193230	-	3e-3	At2g45430	DNA-binding protein-related	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.6874.2.S1_at	CF637577	-	-	3e-3	At2g45430	DNA-binding protein-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.42	1e-53	210	Arabidopsis thaliana	At2g39460	818531	RPL23AA (RIBOSOMAL PROTEIN L23AA)	Encodes a 60S ribosomal protein L23aA (AtrpL23aA). Paralog of RLPL23aB.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.34	6e-29	129	Glycine max	Gma.16202.1.S1_at	BI427211	-	-	5e-44	At2g39460	RPL23AA (RIBOSOMAL PROTEIN L23AA)	C.G.	S.X.	Please select
0.47	1e-117	422	Hordeum vulgare	Contig187_at	Contig187	-	-	9e-33	At2g39460	RPL23AA (RIBOSOMAL PROTEIN L23AA)	C.G.	S.X.	Please select
0.49	7e-162	571	Oryza sativa	Os.384.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.34	6e-26	119	Populus trichocarpa	PtpAffx.33340.2.S1_a_at	CB239462	hypothetical protein	-	7e-64	At3g55280	RPL23AB (RIBOSOMAL PROTEIN L23AB)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.57	5e-143	508	Triticum aestivum	Ta.17418.1.S1_at	CA616844	-	-	2e-18	At2g39460	RPL23AA (RIBOSOMAL PROTEIN L23AA)	C.G.	S.X.	Please select
0.33	2e-34	145	Vitis vinifera	1613150_at	CF213277	hypothetical protein LOC100254719	-	1e-68	At3g55280	RPL23AB (RIBOSOMAL PROTEIN L23AB)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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