CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.6075.1.A1_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 88.2 Zm.6075.1.A1_at BM074652 - - 1e+0 At1g12320 unknown protein S.X. H.G.
0.67 85.8 Zm.6076.1.A1_a_at AY111015.1 COX VIIa-like protein - 3e-1 At2g21195 unknown protein S.X. H.G.
0.63 81.1 Zm.405.1.A1_at AF037034.2 hypothetical LOC541674 - 2e-1 At5g05340 peroxidase, putative S.X. H.G.
0.50 65.7 Zm.13859.1.S1_at AF439724.1 methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cylcohydrolase isoform 1 - 1e-12 At3g12290 tetrahydrofolate dehydrogenase/cyclohydrolase, putative S.X. H.G.
0.42 51.3 Zm.5357.1.S1_at AI619398 hypothetical protein LOC100273070 - 8e-4 At1g03110 transducin family protein / WD-40 repeat family protein S.X. H.G.
0.40 48.5 Zm.17316.1.A1_at CK369406 - - 4e+0 At5g38317 LCR58 (Low-molecular-weight cysteine-rich 58) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.9 95.7 GSM202304 B73 immature ear tissue, biological replicate 3 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.7 95.4 GSM206309 Lower pulvinus 30 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.6 95.2 GSM206305 Right pulvinus control polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.4 94.9 GSM202298 B73 immature ear tissue, biological replicate 2 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.3 94.7 GSM206306 Lower pulvinus 2 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.2 94.5 GSM206299 Left pulvinus control polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.2 94.5 GSM202292 B73 immature ear tissue, biological replicate 1 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.0 94.0 GSM206310 Lower pulvinus 60 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.0 94.0 GSM202320 B73 19 day after pollination embryo tissue, biological replicate 3 GSE8179 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
2.9 93.8 GSM206290 Upper pulvinus 15 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e-1 36 Zm.6027.1.A1_at CF036358 hypothetical protein LOC100275601 - 2e-10 At2g33570 unknown protein C.G. S.X.
0.04 6e-1 34 ZmAffx.1006.1.A1_at AI881370 - - 3e+0 At4g34470 ASK12 (ARABIDOPSIS SKP1-LIKE 12) C.G. S.X.
0.04 6e-1 34 ZmAffx.1006.1.S1_at AI881370 - - 3e+0 At4g34470 ASK12 (ARABIDOPSIS SKP1-LIKE 12) C.G. S.X.
0.02 6e-1 34 Zm.886.4.S1_x_at BE051080 hypothetical protein LOC100274379 - 2e+0 At1g31750 proline-rich family protein C.G. S.X.
0.01 6e-1 34 Zm.13537.1.S1_at AY108307.1 hypothetical protein LOC100216867 - 1e-9 At1g23210 AtGH9B6 (Arabidopsis thaliana glycosyl hydrolase 9B6) C.G. S.X.
0.02 6e-1 34 Zm.13688.1.S1_at AY106837.1 MTN3 - 2e+0 At3g55070 - C.G. S.X.
0.02 2e+0 32 Zm.886.5.A1_at BU499802 - - 1e+0 At1g31750 proline-rich family protein C.G. S.X.
0.02 2e+0 32 Zm.886.5.S1_a_at BU499802 hypothetical protein LOC100274379 - 1e+0 At1g31750 proline-rich family protein C.G. S.X.
0.02 2e+0 32 Zm.8565.1.S1_at CO528893 hypothetical protein LOC100279882 - 8e-7 At2g01110 APG2 (ALBINO AND PALE GREEN 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At1g12320 837786 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.03 5e-1 36 Glycine max PsAffx.psMY011iF01r_at PsAffx.psMY011iF01r - - 4e+0 At5g59060 unknown protein C.G. S.X.
0.17 8e-16 83 Hordeum vulgare Contig15189_at Contig15189 - - 1e+0 At3g09032 unknown protein C.G. S.X.
0.17 5e-11 69 Oryza sativa Os.6623.1.S1_at - - - 0 C.G. S.X.
0.03 5e-1 36 Populus trichocarpa PtpAffx.218578.1.S1_at pmrna34241 hypothetical protein - 5e+0 At5g36180 scpl1 (serine carboxypeptidase-like 1) C.G. S.X.
0.18 3e-20 99 Triticum aestivum Ta.3287.1.S1_at CA639234 - - 3e-1 At2g37000 TCP family transcription factor, putative C.G. S.X.
0.03 6e+0 30 Vitis vinifera 1613973_at AY037918.1 - - 9e+0 At2g03180 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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