Gene omics information

Query gene ID	Zm.6054.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.6054.1.A1_at	AW497492	-	-	3e+0	At5g25490	zinc finger (Ran-binding) family protein	S.X.	H.G.	Please select
0.73	89.9	Zm.14400.1.S1_at	AW000473	hypothetical protein LOC100191706	-	8e-52	At4g02720	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.14489.1.S1_at	BQ527929	MFS18 protein	-	1e+0	At5g67510	60S ribosomal protein L26 (RPL26B)	S.X.	H.G.	Please select
0.60	77.8	Zm.15800.5.A1_x_at	CA404204	-	-	1e-5	At4g13780	methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative	S.X.	H.G.	Please select
0.50	65.7	Zm.5517.1.A1_at	BE051194	hypothetical protein LOC100273563	-	2e-1	At1g15740	leucine-rich repeat family protein	S.X.	H.G.	Please select
0.40	48.5	Zm.4371.1.A1_at	BG517913	hypothetical protein LOC100217272	-	3e-1	At5g22240	OFP10	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
28.9	99.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.8	99.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.9	99.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.7	99.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	7e-21	101	Zm.16172.1.S1_at	CF637681	hypothetical protein LOC100277357	-	1e+0	At2g21060	ATGRP2B (GLYCINE-RICH PROTEIN 2B)	C.G.	S.X.	Please select
0.05	4e-4	46	Zm.1247.1.S1_at	BE575051	EARLY flowering 4 protein	-	4e+0	At3g17570	F-box family protein	C.G.	S.X.	Please select
0.02	1e-3	44	Zm.2245.4.A1_at	BM350915	-	-	2e+0	At5g18300	anac088 (Arabidopsis NAC domain containing protein 88)	C.G.	S.X.	Please select
0.01	1e-3	44	Zm.13093.1.S1_at	CD437312	-	-	2e-12	At5g39550	VIM3 (VARIANT IN METHYLATION 3)	C.G.	S.X.	Please select
0.02	5e-3	42	ZmAffx.1027.1.A1_at	AI881638	-	-	8e-1	At1g01100	60S acidic ribosomal protein P1 (RPP1A)	C.G.	S.X.	Please select
0.02	5e-3	42	ZmAffx.1027.1.S1_at	AI881638	protein AIG1	-	8e-1	At1g01100	60S acidic ribosomal protein P1 (RPP1A)	C.G.	S.X.	Please select
0.02	5e-3	42	ZmAffx.1015.1.A1_at	AI881467	Protein kinase catalytic domain	-	2e-1	At2g19820	LBD9 (LOB DOMAIN-CONTAINING PROTEIN 9)	C.G.	S.X.	Please select
0.02	5e-3	42	ZmAffx.1015.1.S1_at	AI881467	Protein kinase catalytic domain	-	2e-1	At2g19820	LBD9 (LOB DOMAIN-CONTAINING PROTEIN 9)	C.G.	S.X.	Please select
0.01	5e-3	42	Zm.7574.1.A1_at	CO527472	ubiquitin fusion degradation protein 1	-	2e-16	At4g38930	ubiquitin fusion degradation UFD1 family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e+0	34	Arabidopsis thaliana	At5g25490	832624	zinc finger (Ran-binding) family protein	F:binding, zinc ion binding;P:biological_process unknown;C:intracellular;MPOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	4e+0	34	Glycine max	PsAffx.psHA001iF08r_s_at	PsAffx.psHA001iF08r	-	-	2e+1	At5g07250	ATRBL3 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 3)	C.G.	S.X.	Please select
0.11	2e-18	93	Hordeum vulgare	Contig11576_at	Contig11576	-	-	4e-1	At3g58150	-	C.G.	S.X.	Please select
0.11	3e-11	71	Oryza sativa	Os08g0366300	9636.m02755	-	-	1e+0	At3g12835	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	4e+0	34	Populus trichocarpa	PtpAffx.207854.1.S1_at	pmrna15590	hypothetical protein	-	2e-5	At5g15210	ATHB30 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 30)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.12	6e-11	69	Triticum aestivum	TaAffx.107115.1.S1_at	CA702745	-	-	4e+0	At1g68130	AtIDD14 (Arabidopsis thaliana Indeterminate(ID)-Domain 14)	C.G.	S.X.	Please select
0.02	4e+0	32	Vitis vinifera	1622848_at	CF568868	-	-	1e-12	At2g06255	ELF4-L3 (ELF4-Like 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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