CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.6039.1.A1_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 92.1 Zm.6039.1.A1_at BG837895 - - 9e-65 At5g03520 ATRAB8C S.X. H.G.
0.78 92.5 Zm.5220.1.S1_at AI614989 hypothetical protein LOC100279470 - 1e+0 At5g36120 CCB3 (COFACTOR ASSEMBLY, COMPLEX C (B6F),) S.X. H.G.
0.69 86.5 Zm.18590.1.A1_at AW562614 exostosin-like - 1e+0 At5g22930 unknown protein S.X. H.G.
0.65 82.1 Zm.5441.1.S1_at CO528962 hypothetical protein LOC100274317 - 3e+0 At3g23130 SUP (SUPERMAN) S.X. H.G.
0.64 81.7 Zm.16482.2.A1_at BM337760 - - 9e-19 At3g09630 60S ribosomal protein L4/L1 (RPL4A) S.X. H.G.
0.62 79.8 Zm.18903.1.A1_at CO530915 - - 7e-2 At5g07400 forkhead-associated domain-containing protein / FHA domain-containing protein S.X. H.G.
0.62 79.8 ZmAffx.1097.1.S1_at AW120085 - - 1e+1 At5g25770 unknown protein S.X. H.G.
0.62 79.8 Zm.4561.2.A1_x_at CO532693 - - 6e+0 At5g65520 binding S.X. H.G.
0.62 79.8 Zm.3484.1.A1_at AW438127 hypothetical protein LOC100273241 - 2e+0 At1g67700 unknown protein S.X. H.G.
0.59 76.1 Zm.5917.1.A1_a_at BM337345 hypothetical protein LOC100192679 - 2e+0 At1g27970 NTF2B (NUCLEAR TRANSPORT FACTOR 2B) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.7 97.9 GSM253282 ZM_8d_SG200_3Alu_III GSE10023 Maize gene expression during infection with Ustilago maydis
7.4 97.8 GSM253271 ZM_4.5d_SG200_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
5.9 97.3 GSM253272 ZM_4.5d_SG200_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
5.5 97.1 GSM253281 ZM_8d_SG200_3Alu_II GSE10023 Maize gene expression during infection with Ustilago maydis
4.7 96.5 GSM253273 ZM_4.5d_SG200_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
4.0 95.8 GSM253280 ZM_8d_SG200_3Alu_I GSE10023 Maize gene expression during infection with Ustilago maydis
3.9 95.7 GSM290555 CCR mutant M1 with array type maize from Affymetrix GSE11531 Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
3.4 94.9 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3 94.7 GSM253278 ZM_8d_SG200_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
3.0 94.0 GSM206332 Lower pulvinus 15 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.35 9e-97 353 Zm.2826.1.S1_at BM333443 hypothetical protein LOC100192989 - 2e-62 At3g46060 ATRAB8A C.G. S.X.
0.32 2e-76 286 Zm.2593.1.S1_at CA403212 ras-related protein ARA-3 - 5e-54 At5g59840 Ras-related GTP-binding family protein C.G. S.X.
0.31 2e-27 123 Zm.17918.1.A1_at CK985445 ras-related protein ARA-3 - 7e-22 At3g09900 ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) C.G. S.X.
0.07 7e-8 57 Zm.5901.1.A1_at BG841111 hypothetical protein LOC100191848 - 4e-39 At5g47200 ATRAB1A C.G. S.X.
0.02 4e-3 42 Zm.4917.1.A1_at CK347849 - - 3e-9 At3g11730 ATFP8 C.G. S.X.
0.02 7e-2 38 Zm.17108.1.S1_at CF972407 hypothetical protein LOC100216670 - 8e-31 At3g46830 ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C) C.G. S.X.
0.02 3e-1 36 Zm.204.1.A1_at U22432.1 ras related protein1 - 2e-90 At4g17170 RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C) C.G. S.X.
0.01 3e-1 36 Zm.16982.2.A1_at BM080083 - - 4e-8 At4g39990 RABA4B (RAB GTPASE HOMOLOG A4B) C.G. S.X.
0.01 3e-1 36 Zm.16982.2.S1_at AY107397.1 - - 3e-21 At4g32640 protein binding / zinc ion binding C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.40 9e-65 248 Arabidopsis thaliana At5g03520 831817 ATRAB8C F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBVA - - - C.G. S.X.
0.43 1e-61 238 Glycine max GmaAffx.93385.1.S1_x_at CF806095 - - 1e-68 At3g46060 ATRAB8A C.G. S.X.
0.44 3e-100 365 Hordeum vulgare Contig3337_s_at Contig3337 - - 5e-50 At5g59840 Ras-related GTP-binding family protein C.G. S.X.
0.48 2e-73 278 Oryza sativa Os.12233.2.S1_x_at - - - 0 C.G. S.X.
0.34 1e-52 208 Populus trichocarpa Ptp.2072.2.S1_s_at CA931719 hypothetical protein - 6e-83 At3g46060 ATRAB8A C.G. S.X.
0.39 4e-116 418 Triticum aestivum Ta.17828.1.S1_at CA624647 - - 2e-7 At3g09900 ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) C.G. S.X.
0.35 2e-44 178 Vitis vinifera 1617354_at CA816074 hypothetical protein LOC100263639 - 6e-121 At3g46060 ATRAB8A C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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