Gene omics information

Query gene ID	Zm.601.1.A1_at
Gene name	NOD26-like membrane intrinsic protein2
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.601.1.A1_at	AF326485.1	NOD26-like membrane intrinsic protein2	-	7e-1	At3g06750	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.44	55.7	Zm.13976.1.S1_at	AY106277.1	RNA recognition motif family protein	-	1e-1	At5g11830	-	S.X.	H.G.	Please select
0.33	36.0	Zm.3743.2.A1_at	CF624095	hypothetical protein LOC100274177	-	2e+0	At5g04045	Expressed protein	S.X.	H.G.	Please select
0.19	12.8	Zm.12364.2.A1_a_at	CA404942	-	-	3e-1	At5g23760	heavy-metal-associated domain-containing protein	S.X.	H.G.	Please select
0.14	7.7	Zm.16434.1.S1_at	CF348926	-	-	1e+0	At2g17850	-	S.X.	H.G.	Please select
0.06	2.3	Zm.4245.1.A1_at	BG265399	-	-	2e+0	At3g07760	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.4	98.5	GSM320442	protocol: mRNA - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM202281	Mo17 11-day seedling aerial tissue biological replicate 2	GSE8174	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Seedling data
7.5	97.8	GSM202406	Zmet2 study 11-day seedling aerial tissue genotype Mo17 Rep2	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type
7.2	97.8	GSM320446	protocol: mRNA - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM202407	Zmet2 study 11-day seedling aerial tissue genotype Mo17 zmet2-m1 Rep2	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type
6.4	97.5	GSM202285	Mo17 11-day seedling aerial tissue biological replicate 3	GSE8174	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Seedling data
5.7	97.2	GSM202277	Mo17 11-day seedling aerial tissue biological replicate 1	GSE8174	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Seedling data
5.2	96.9	GSM258184	Mo17 11-day seedling aerial tissue biological replicate 2	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
5.1	96.8	GSM202410	Zmet2 study 11-day seedling aerial tissue genotype Mo17 Rep3	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.64	0	1185	Zm.623.1.A1_at	AF342810.1	NOD26-like membrane integral protein ZmNIP2-3	-	6e-1	At3g06750	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.45	0	734	Zm.1753.1.A1_a_at	AF326484.1	NOD26-like membrane integral protein ZmNIP2-1	-	5e-5	At1g80760	NIP6	C.G.	S.X.	Please select
0.19	6e-61	234	Zm.1753.2.S1_a_at	AW438229	NOD26-like membrane integral protein ZmNIP2-1	-	4e-1	At3g06750	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.17	6e-61	234	Zm.1753.2.A1_at	AY109871.1	NOD26-like membrane integral protein ZmNIP2-1	-	4e-1	At3g06750	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.03	1e-3	44	Zm.615.1.S1_at	AF057183.1	porin2	-	2e-12	At3g16240	DELTA-TIP	C.G.	S.X.	Please select
0.09	5e-3	42	Zm.2006.1.A1_at	AF326483.1	NOD26-like membrane integral protein ZmNIP1-1	-	2e-1	At4g18910	NIP1	C.G.	S.X.	Please select
0.02	2e-2	40	Zm.9197.1.A1_at	AF037061.1	tonoplast intrinsic protein1	-	1e-8	At3g26520	TIP2 (TONOPLAST INTRINSIC PROTEIN 2)	C.G.	S.X.	Please select
0.02	7e-2	38	Zm.8843.1.A1_at	BM266672	FIP1	-	1e+0	At4g40100	ABA-responsive protein-related	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.602.1.A1_a_at	AF326486.1	NOD26-like membrane intrinsic protein3	-	4e-3	At4g10380	NIP5	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	7e-1	36	Arabidopsis thaliana	At3g06750	819860	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPFOBV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e+0	36	Glycine max	GmaAffx.92105.1.S1_s_at	CF807337	Nodulin-26	-	3e-33	At2g36830	GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN)	C.G.	S.X.	Please select
0.48	0	862	Hordeum vulgare	Contig5632_s_at	Contig5632	-	-	3e-3	At5g41430	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.53	0	975	Oryza sativa	Os06g0228200	AK112022.1	-	Major intrinsic protein family protein	8e-1	At2g25810	TIP4	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	4e+0	34	Populus trichocarpa	PtpAffx.217746.1.S1_at	pmrna33134	hypothetical protein	-	3e+0	At5g38440	self-incompatibility protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.46	0	805	Triticum aestivum	Ta.428.1.S1_at	CK155078	-	-	6e-2	At3g06100	NIP7	C.G.	S.X.	Please select
0.02	3e+0	32	Vitis vinifera	1611864_at	CB970240	hypothetical protein LOC100243103	-	6e-2	At2g21150	XCT (XAP5 CIRCADIAN TIMEKEEPER)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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