Gene omics information

Query gene ID	Zm.6008.1.S1_at
Gene name	hypothetical protein LOC100216743
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	88.2	Zm.6008.1.S1_at	CA401170	hypothetical protein LOC100216743	-	4e-2	At5g56600	PRF3 (PROFILIN 3)	S.X.	H.G.	Please select
0.59	76.1	ZmAffx.1082.1.S1_at	AI973391	-	-	3e+0	At1g60983	SCRL8 (SCR-Like 8)	S.X.	H.G.	Please select
0.32	33.4	Zm.4389.1.A1_at	AI714446	-	-	1e+1	At5g38310	unknown protein	S.X.	H.G.	Please select
0.25	21.3	Zm.13833.1.A1_at	CF649598	Zea mays MADS6 /// Zea mays MADS7	-	4e-5	At3g61120	AGL13 (AGAMOUS-LIKE 13)	S.X.	H.G.	Please select
0.21	15.5	Zm.365.1.A1_at	AB062095.1	response regulator 9	-	3e-4	At3g16857	ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1)	S.X.	H.G.	Please select
0.21	15.5	Zm.5309.1.A1_x_at	AI619196	hypothetical protein LOC100192865	-	7e-10	At1g56450	PBG1	S.X.	H.G.	Please select
0.17	10.6	Zm.11596.1.A1_at	BM379205	-	-	7e-2	At2g46308	unknown protein	S.X.	H.G.	Please select
0.17	10.6	ZmAffx.1046.1.A1_at	AI881792	-	-	8e-1	At1g79160	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.2	98.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM206309	Lower pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.2	96.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-6	52	Zm.4446.1.S1_at	AW520005	hypothetical protein LOC100279946	-	1e-7	At4g14340	CKI1 (CASEIN KINASE I)	C.G.	S.X.	Please select
0.03	5e-6	52	Zm.4073.1.A1_at	AI834418	-	-	4e+0	At3g11930	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.02	2e-5	50	Zm.1809.1.S1_at	BG840738	-	-	2e+0	At5g51812	unknown protein	C.G.	S.X.	Please select
0.03	2e-5	50	Zm.13643.1.A1_at	CF057020	hypothetical protein LOC100280291	-	1e+0	At4g13615	four F5 protein-related / 4F5 protein-related	C.G.	S.X.	Please select
0.02	7e-5	48	Zm.6933.1.A1_at	BI679493	hypothetical protein LOC100274350	-	3e+0	At1g33280	ANAC015 (Arabidopsis NAC domain containing protein 15)	C.G.	S.X.	Please select
0.02	7e-5	48	Zm.6771.1.A1_at	CF629244	growth-regulating factor 13-like	-	3e-5	At2g36400	AtGRF3 (GROWTH-REGULATING FACTOR 3)	C.G.	S.X.	Please select
0.02	7e-5	48	Zm.6192.1.S1_a_at	CK394758	-	-	5e-1	At3g52990	pyruvate kinase, putative	C.G.	S.X.	Please select
0.03	7e-5	48	Zm.4542.1.A1_at	AI734680	-	-	1e+0	At3g44783	unknown protein	C.G.	S.X.	Please select
0.03	7e-5	48	Zm.4152.1.A1_at	AI855242	hypothetical protein LOC100277510	-	4e+0	At5g27850	60S ribosomal protein L18 (RPL18C)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-2	40	Arabidopsis thaliana	At5g56600	835761	PRF3 (PROFILIN 3)	Encodes profilin3, a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton. Originally known as profilin5, and later named profilin3. Expressed in vegetative organs.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e-3	46	Glycine max	GmaAffx.89678.1.A1_s_at	CK606714	CDNA for glutamine synthetase (3' region)	-	9e-2	At1g65352	-	C.G.	S.X.	Please select
0.09	8e-8	57	Hordeum vulgare	Contig16406_at	Contig16406	-	-	3e-2	At3g15030	TCP4 (TCP family transcription factor 4)	C.G.	S.X.	Please select
0.07	3e-38	161	Oryza sativa	Os02g0147800	AK106225.1	-	Homeo protein (Fragment)	3e-1	At5g07600	oleosin / glycine-rich protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e-1	38	Populus trichocarpa	PtpAffx.210962.1.S1_s_at	pmrna21538	hypothetical protein	-	3e-2	At5g56600	PRF3 (PROFILIN 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	7e-7	56	Triticum aestivum	Ta.14404.3.S1_x_at	CA726331	-	-	9e-9	At2g36930	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.02	7e-1	34	Vitis vinifera	1607520_at	BQ799108	hypothetical protein LOC100258931	-	1e+0	At3g27880	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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