Gene omics information

Query gene ID Zm.6006.1.A1_at
Gene name spermidine synthase 1
Organism Zea mays


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.98100.0Zm.6006.1.A1_atAY110392.1spermidine synthase 1-7e-14At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)S.X.H.G.
0.5674.4Zm.5141.2.A1_atAI691820hypothetical protein LOC100191902-6e-25At1g10430PP2A-2S.X.H.G.
0.5674.4Zm.5415.1.A1_atBM074945--5e-1At3g22210unknown proteinS.X.H.G.
0.5469.8Zm.13741.1.A1_atCK828166hypothetical protein LOC100192567-3e-2At3g02790zinc finger (C2H2 type) family proteinS.X.H.G.
0.5166.4Zm.12112.1.A1_atBM382213hypothetical protein LOC100193982 /// hypothetical protein LOC100276462-3e-7At4g10810unknown proteinS.X.H.G.
0.5065.7Zm.6510.1.A1_atCF040493--5e-1At5g50740metal ion bindingS.X.H.G.
0.4861.3Zm.788.1.A1_a_atAY103572.1hypothetical protein LOC100194151-7e-72At3g27240cytochrome c1, putativeS.X.H.G.
0.4658.4Zm.15607.1.S1_atCA399646--3e-1At4g21902unknown proteinS.X.H.G.
0.4658.4Zm.13787.1.S1_atAY105138.1--2e-3At3g03490PEX19-1 (peroxin 19-1)S.X.H.G.
0.4455.7Zm.13186.1.S1_atCA408939--1e+0At5g58520protein kinase family proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
5.196.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.096.7GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.296.0GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.895.5GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.795.4GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.595.1GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.595.1GSM290554WS2 with array type maize from AffymetrixGSE11531Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
3.294.5GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.294.5GSM162266Wild type 2 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maize
3.194.3GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.390686Zm.4248.1.A1_atAY110118.1hypothetical protein LOC100279222-6e-7At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)C.G.S.X.
0.313e-42173Zm.2540.1.A1_atAY105941.1spermidine synthase-2e-3At1g23820SPDS1 (spermidine synthase 1)C.G.S.X.
0.101e-757Zm.16536.2.A1_atCK347784hypothetical protein LOC100272866-6e-20At1g70310SPDS2 (spermidine synthase 2)C.G.S.X.
0.044e-446Zm.16536.1.A1_a_atAY103592.1hypothetical protein LOC100272866 /// spermidine synthase 1-1e-17At1g23820SPDS1 (spermidine synthase 1)C.G.S.X.
0.044e-446Zm.16536.1.A1_atAY103592.1spermidine synthase 1-1e-17At1g23820SPDS1 (spermidine synthase 1)C.G.S.X.
0.012e-344Zm.3959.2.A1_atAY110235.1integral membrane protein like-1e-20At1g34020transporter-relatedC.G.S.X.
0.012e-344Zm.3959.2.A1_a_atAY110235.1hypothetical protein LOC100193090 /// hypothetical protein LOC100216942 /// integral membrane protein like-1e-20At1g34020transporter-relatedC.G.S.X.
0.022e-344Zm.12250.1.S1_atBQ294093--4e+0At3g01250unknown proteinC.G.S.X.
0.016e-342Zm.2468.1.S1_atAW120207hypothetical protein LOC100191330-2e+0At4g39190unknown proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.187e-1479Arabidopsis thalianaAt5g53120835392SPDS3 (SPERMIDINE SYNTHASE 3)encodes a novel spermine synthase and is a paralog of previously characterized spermidine synthases, SPDS1 and SPDS2. SPDS3 forms heterodimers with SDPS2, which in turn forms heterodimers with SDPS1 in vivo. The gene does not complement speDelta3 deficiency of spermidine synthase in yeast but DOES complement speDelta4 deficiency.---C.G.S.X.
0.132e-861Glycine maxGmaAffx.87908.1.S1_atBM270150--2e-23At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)C.G.S.X.
0.530928Hordeum vulgareContig1210_atContig1210--2e-16At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)C.G.S.X.
0.484e-143510Oryza sativaOs06g0528600AB098063.1-Spermidine synthase 1 (EC 2.5.1.16) (Putrescineaminopropyltransferase 1) (SPDSY 1)1e-8At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)C.G.S.X.
0.133e-757Populus trichocarpaPtpAffx.89950.1.S1_atCK318312hypothetical protein-6e-63At1g70310SPDS2 (spermidine synthase 2)C.G.S.X.
0.471e-151537Triticum aestivumTa.9393.2.S1_s_atCD933620--5e-24At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)C.G.S.X.
0.067e-857Vitis vinifera1609980_a_atCA818363spermine synthase-4e+0At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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