Gene omics information

Query gene ID	Zm.5990.2.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.5990.2.A1_at	AI834730	-	-	8e+0	At5g59510	RTFL5 (ROTUNDIFOLIA LIKE 5)	S.X.	H.G.	Please select
0.73	89.9	Zm.7073.2.A1_at	AI600777	-	-	1e-2	At5g37260	RVE2 (REVEILLE 2)	S.X.	H.G.	Please select
0.61	79.5	Zm.599.2.S1_a_at	AY111360.1	chromomethylase	-	2e+0	At3g30350	unknown protein	S.X.	H.G.	Please select
0.60	77.8	Zm.7341.1.A1_at	BM267652	TFIIB-related protein	-	2e-14	At4g36650	ATPBRP (PLANT-SPECIFIC TFIIB-RELATED PROTEIN)	S.X.	H.G.	Please select
0.50	65.7	Zm.599.2.A1_at	AY111360.1	Chromomethylase	-	2e+0	At3g30350	unknown protein	S.X.	H.G.	Please select
0.47	59.9	Zm.11259.1.A1_at	AI966828	m19 protein	-	1e-2	At4g18960	AG (AGAMOUS)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.8	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.9	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
6.0	97.3	GSM290553	WS1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
5.9	97.3	GSM290555	CCR mutant M1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	2e-44	178	Zm.5990.1.S1_a_at	AY111300.1	-	-	2e-6	At5g49980	AFB5 (Auxin F-Box protein 5)	C.G.	S.X.	Please select
0.10	2e-44	178	Zm.5990.1.A1_at	AY111300.1	-	-	2e-6	At5g49980	AFB5 (Auxin F-Box protein 5)	C.G.	S.X.	Please select
0.15	2e-44	178	Zm.5990.1.S1_at	AY111300.1	hypothetical protein LOC100279510	-	2e-6	At5g49980	AFB5 (Auxin F-Box protein 5)	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.7598.1.A1_at	CF629653	-	-	3e-3	At2g40510	40S ribosomal protein S26 (RPS26A)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.4730.1.A1_at	BM078833	hypothetical protein LOC100194390	-	6e-4	At4g25570	ACYB-2	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.18100.3.A1_at	BI097725	ultraviolet-B-repressible protein	-	9e-2	At4g27810	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.11787.1.A1_a_at	BM380772	-	-	6e+0	At5g17523	-	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.447.1.A1_at	AF126052.1	Rho-related protein from plants 1	-	2e-41	At5g62880	ARAC10	C.G.	S.X.	Please select
0.02	8e-1	34	Zm.1496.1.A1_at	BM349973	UPF0497 membrane protein 9	-	2e+0	At2g17705	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e+0	32	Arabidopsis thaliana	At5g59510	836070	RTFL5 (ROTUNDIFOLIA LIKE 5)	F:molecular_function unknown;P:shoot development;C:cellular_component unknown;PMFOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	7e-1	36	Glycine max	PsAffx.CL1713Contig1_at	PsAffx.CL1713Contig1	-	-	2e-2	At1g76940	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.04	6e-5	48	Hordeum vulgare	Contig10247_at	Contig10247	-	-	2e-8	At5g49980	AFB5 (Auxin F-Box protein 5)	C.G.	S.X.	Please select
0.06	3e-10	67	Oryza sativa	Os02g0759700	AK111935.1	-	Cyclin-like F-box domain containing protein	9e-8	At5g49980	AFB5 (Auxin F-Box protein 5)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e-1	38	Populus trichocarpa	PtpAffx.202826.1.S1_at	pmrna5600	NAC domain protein, IPR003441	-	7e-5	At5g64530	XND1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.14	2e-3	44	Triticum aestivum	Ta.21131.1.S1_a_at	CA597975	-	-	2e+0	At1g06770	DRIP1 (DREB2A-INTERACTING PROTEIN 1)	C.G.	S.X.	Please select
0.03	9e+0	30	Vitis vinifera	1622631_at	CA818766	-	-	3e+0	At2g15325	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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