Gene omics information

Query gene ID Zm.5990.1.S1_a_at
Gene name
Organism Zea mays


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6785.8Zm.5990.1.S1_a_atAY111300.1--2e-6At5g49980AFB5 (Auxin F-Box protein 5)S.X.H.G.
0.4658.4Zm.6968.1.A1_atAI065873apurinic endonuclease-redox protein-2e+0At3g077503' exoribonuclease family domain 1-containing proteinS.X.H.G.
0.4455.7Zm.3903.1.S1_atAW438311--1e+0At5g02110CYCD7S.X.H.G.
0.4455.7Zm.8751.1.A1_atBM348137--1e+0At3g05700-S.X.H.G.
0.4048.5Zm.5976.2.S1_atBG265782--3e+0At5g4008060S ribosomal protein-relatedS.X.H.G.
0.3844.2Zm.17740.2.A1_a_atBI430966hypothetical protein LOC100277215-2e+0At1g77200AP2 domain-containing transcription factor TINY, putativeS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
37.999.9GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
36.999.9GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.399.7GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.599.2GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.099.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.499.0GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.798.9GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.598.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.498.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.695.2GSM320458protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.8701517Zm.5990.1.A1_atAY111300.1--2e-6At5g49980AFB5 (Auxin F-Box protein 5)C.G.S.X.
0.9701517Zm.5990.1.S1_atAY111300.1hypothetical protein LOC100279510-2e-6At5g49980AFB5 (Auxin F-Box protein 5)C.G.S.X.
0.152e-44178Zm.5990.2.A1_atAI834730--8e+0At5g59510RTFL5 (ROTUNDIFOLIA LIKE 5)C.G.S.X.
0.011e-240Zm.17222.1.A1_atCK144311--2e-13At3g62980TIR1 (TRANSPORT INHIBITOR RESPONSE 1)C.G.S.X.
0.018e-134Zm.17654.1.S1_atCK369051hypothetical protein LOC100193617-2e-17At2g31660SAD2 (SUPER SENSITIVE TO ABA AND DROUGHT2)C.G.S.X.
0.023e+032Zm.9151.1.S1_atBM266916katanin p60 ATPase-containing subunit-3e-1At1g80350ERH3 (ECTOPIC ROOT HAIR 3)C.G.S.X.
0.023e+032Zm.8468.1.A1_atBM074266gibberellin receptor GID1L2-6e+0At3g45480zinc ion bindingC.G.S.X.
0.023e+032Zm.8468.1.A1_s_atBM074266--6e+0At3g45480zinc ion bindingC.G.S.X.
0.013e+032Zm.4989.1.A1_atAI932047hypothetical protein LOC100191629-1e-43At3g59990MAP2B (METHIONINE AMINOPEPTIDASE 2B)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.052e-654Arabidopsis thalianaAt5g49980835062AFB5 (Auxin F-Box protein 5)F:ubiquitin-protein ligase activity;P:unknown;C:unknown;PMOF---C.G.S.X.
0.033e+034Glycine maxPsAffx.psHB016xL22f_atPsAffx.psHB016xL22f--1e+1At5g57780-C.G.S.X.
0.375e-144510Hordeum vulgareContig10247_atContig10247--2e-8At5g49980AFB5 (Auxin F-Box protein 5)C.G.S.X.
0.499e-143508Oryza sativaOs02g0759700AK111935.1-Cyclin-like F-box domain containing protein9e-8At5g49980AFB5 (Auxin F-Box protein 5)C.G.S.X.
0.051e-552Populus trichocarpaPtp.1728.1.S1_atAF139835.1f-box family protein-5e-22At5g49980AFB5 (Auxin F-Box protein 5)C.G.S.X.
0.301e-38161Triticum aestivumTaAffx.56516.1.S1_atCA650013--4e+0At4g24390F-box family protein (FBX14)C.G.S.X.
0.049e-340Vitis vinifera1619177_atCD720160hypothetical protein LOC100265301-5e+0At4g26030transcription factorC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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