Gene omics information

Query gene ID	Zm.5990.1.S1_a_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.5990.1.S1_a_at	AY111300.1	-	-	2e-6	At5g49980	AFB5 (Auxin F-Box protein 5)	S.X.	H.G.	Please select
0.46	58.4	Zm.6968.1.A1_at	AI065873	apurinic endonuclease-redox protein	-	2e+0	At3g07750	3' exoribonuclease family domain 1-containing protein	S.X.	H.G.	Please select
0.44	55.7	Zm.3903.1.S1_at	AW438311	-	-	1e+0	At5g02110	CYCD7	S.X.	H.G.	Please select
0.44	55.7	Zm.8751.1.A1_at	BM348137	-	-	1e+0	At3g05700	-	S.X.	H.G.	Please select
0.40	48.5	Zm.5976.2.S1_at	BG265782	-	-	3e+0	At5g40080	60S ribosomal protein-related	S.X.	H.G.	Please select
0.38	44.2	Zm.17740.2.A1_a_at	BI430966	hypothetical protein LOC100277215	-	2e+0	At1g77200	AP2 domain-containing transcription factor TINY, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
37.9	99.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
36.9	99.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.3	99.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.5	99.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.0	99.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.4	99.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.7	98.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.87	0	1517	Zm.5990.1.A1_at	AY111300.1	-	-	2e-6	At5g49980	AFB5 (Auxin F-Box protein 5)	C.G.	S.X.	Please select
0.97	0	1517	Zm.5990.1.S1_at	AY111300.1	hypothetical protein LOC100279510	-	2e-6	At5g49980	AFB5 (Auxin F-Box protein 5)	C.G.	S.X.	Please select
0.15	2e-44	178	Zm.5990.2.A1_at	AI834730	-	-	8e+0	At5g59510	RTFL5 (ROTUNDIFOLIA LIKE 5)	C.G.	S.X.	Please select
0.01	1e-2	40	Zm.17222.1.A1_at	CK144311	-	-	2e-13	At3g62980	TIR1 (TRANSPORT INHIBITOR RESPONSE 1)	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.17654.1.S1_at	CK369051	hypothetical protein LOC100193617	-	2e-17	At2g31660	SAD2 (SUPER SENSITIVE TO ABA AND DROUGHT2)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.9151.1.S1_at	BM266916	katanin p60 ATPase-containing subunit	-	3e-1	At1g80350	ERH3 (ECTOPIC ROOT HAIR 3)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.8468.1.A1_at	BM074266	gibberellin receptor GID1L2	-	6e+0	At3g45480	zinc ion binding	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.8468.1.A1_s_at	BM074266	-	-	6e+0	At3g45480	zinc ion binding	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.4989.1.A1_at	AI932047	hypothetical protein LOC100191629	-	1e-43	At3g59990	MAP2B (METHIONINE AMINOPEPTIDASE 2B)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	2e-6	54	Arabidopsis thaliana	At5g49980	835062	AFB5 (Auxin F-Box protein 5)	F:ubiquitin-protein ligase activity;P:unknown;C:unknown;PMOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e+0	34	Glycine max	PsAffx.psHB016xL22f_at	PsAffx.psHB016xL22f	-	-	1e+1	At5g57780	-	C.G.	S.X.	Please select
0.37	5e-144	510	Hordeum vulgare	Contig10247_at	Contig10247	-	-	2e-8	At5g49980	AFB5 (Auxin F-Box protein 5)	C.G.	S.X.	Please select
0.49	9e-143	508	Oryza sativa	Os02g0759700	AK111935.1	-	Cyclin-like F-box domain containing protein	9e-8	At5g49980	AFB5 (Auxin F-Box protein 5)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	1e-5	52	Populus trichocarpa	Ptp.1728.1.S1_at	AF139835.1	f-box family protein	-	5e-22	At5g49980	AFB5 (Auxin F-Box protein 5)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.30	1e-38	161	Triticum aestivum	TaAffx.56516.1.S1_at	CA650013	-	-	4e+0	At4g24390	F-box family protein (FBX14)	C.G.	S.X.	Please select
0.04	9e-3	40	Vitis vinifera	1619177_at	CD720160	hypothetical protein LOC100265301	-	5e+0	At4g26030	transcription factor	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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