Gene omics information

Query gene ID	Zm.599.2.S1_a_at
Gene name	chromomethylase
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	88.2	Zm.599.2.S1_a_at	AY111360.1	chromomethylase	-	2e+0	At3g30350	unknown protein	S.X.	H.G.	Please select
0.92	99.2	Zm.5990.2.A1_at	AI834730	-	-	8e+0	At5g59510	RTFL5 (ROTUNDIFOLIA LIKE 5)	S.X.	H.G.	Please select
0.67	85.8	Zm.7073.2.A1_at	AI600777	-	-	1e-2	At5g37260	RVE2 (REVEILLE 2)	S.X.	H.G.	Please select
0.60	77.8	Zm.599.2.A1_at	AY111360.1	Chromomethylase	-	2e+0	At3g30350	unknown protein	S.X.	H.G.	Please select
0.55	71.6	Zm.7341.1.A1_at	BM267652	TFIIB-related protein	-	2e-14	At4g36650	ATPBRP (PLANT-SPECIFIC TFIIB-RELATED PROTEIN)	S.X.	H.G.	Please select
0.44	55.7	Zm.11259.1.A1_at	AI966828	m19 protein	-	1e-2	At4g18960	AG (AGAMOUS)	S.X.	H.G.	Please select
0.40	48.5	Zm.13860.1.S1_at	AF439722.1	S-adenosyl-L-homocysteine hydrolase	-	2e-76	At4g13940	MEE58 (MATERNAL EFFECT EMBRYO ARREST 58)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.6	98.8	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
10.4	98.4	GSM202306	Mo17xB73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
9.4	98.3	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
9.4	98.3	GSM202299	Mo17xB73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
8.5	98.1	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
8.5	98.1	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
7.7	97.9	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
7.3	97.8	GSM202295	Mo17xB73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
7.2	97.8	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
6.9	97.7	GSM202296	B73xMo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.56	0	1092	Zm.599.2.A1_at	AY111360.1	Chromomethylase	-	2e+0	At3g30350	unknown protein	C.G.	S.X.	Please select
0.38	0	1071	Zm.599.1.S1_a_at	AY093416.1	chromomethylase	-	2e+0	At5g49330	AtMYB111 (myb domain protein 111)	C.G.	S.X.	Please select
0.38	0	1071	Zm.599.1.S1_x_at	AY093416.1	chromomethylase	-	2e+0	At5g49330	AtMYB111 (myb domain protein 111)	C.G.	S.X.	Please select
0.27	0	734	Zm.587.1.A1_at	AF243043.1	DNA cytosine methyltransferase MET2a	-	4e-1	At1g69770	CMT3 (chromomethylase 3)	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.5067.1.A1_at	CF057843	-	-	8e-1	At3g55254	-	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.6477.1.A1_at	CK986015	hypothetical protein LOC100272350	-	5e-11	At4g26780	AR192	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.578.1.S1_at	AF112150.1	MADS box protein 3	-	3e-3	At5g60910	AGL8 (agamous-like 8)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.18255.1.S1_at	CF006723	hypothetical protein LOC100191719	-	3e-1	At3g07650	COL9 (CONSTANS-LIKE 9)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.17960.1.A1_at	CK348236	hypothetical protein LOC100276613	-	6e+0	At5g62470	MYB96 (myb domain protein 96)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At3g30350	822736	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	7e-1	36	Glycine max	GmaAffx.42228.1.S1_at	BQ610340	-	-	2e-4	At1g80740	CMT1 (CHROMOMETHYLASE 1)	C.G.	S.X.	Please select
0.44	1e-64	246	Hordeum vulgare	Contig15470_at	Contig15470	-	-	2e+0	At3g55740	PROT2 (PROLINE TRANSPORTER 2)	C.G.	S.X.	Please select
0.34	9e-72	272	Oryza sativa	Os10g0104900	AK112062.1	-	Chromomethylase 3	1e-5	At1g69770	CMT3 (chromomethylase 3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e-1	38	Populus trichocarpa	PtpAffx.208538.1.S1_s_at	pmrna16945	hypothetical protein	-	8e-1	At2g24550	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.62	0	642	Triticum aestivum	Ta.27527.1.S1_at	CA622433	-	-	2e+0	At5g54165	unknown protein	C.G.	S.X.	Please select
0.02	9e+0	30	Vitis vinifera	1615756_at	CD717221	-	-	3e-1	At1g80740	CMT1 (CHROMOMETHYLASE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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