Gene omics information

Query gene ID	Zm.5987.1.A2_at
Gene name	cysteine protease component of protease-inhibitor complex
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.1	Zm.5987.1.A2_at	AF019147.1	cysteine protease component of protease-inhibitor complex	-	7e-14	At5g43060	cysteine proteinase, putative / thiol protease, putative	S.X.	H.G.	Please select
0.67	85.8	Zm.6784.2.A1_a_at	CK347672	erwinia induced protein 2 /// erwinia induced protein 2	-	1e-2	At3g03160	unknown protein	S.X.	H.G.	Please select
0.55	71.6	Zm.5870.1.S1_at	BF729179	hypothetical protein LOC100272552	-	1e+0	At3g26147	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.5156.1.A1_at	AI603750	adaptin N terminal region family protein	-	1e-14	At5g11490	adaptin family protein	S.X.	H.G.	Please select
0.46	58.4	Zm.630.1.A1_at	AF127022.1	RNA polymerase2	-	1e-7	At2g24120	SCA3 (SCABRA 3)	S.X.	H.G.	Please select
0.44	55.7	Zm.8720.2.A1_a_at	BM267300	UDP-glucose-4-epimerase	-	5e+0	At5g16486	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.8	99.3	GSM253274	ZM_8d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
12.3	98.7	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis
10.8	98.5	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
10.6	98.4	GSM320442	protocol: mRNA - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
10.1	98.4	GSM253275	ZM_8d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
9.9	98.3	GSM253276	ZM_8d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
9.5	98.3	GSM320441	protocol: mRNA - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320444	protocol: mRNA - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.96	0	3489	Zm.5987.1.A2_a_at	AF019147.1	cysteine protease 1 /// cysteine protease 1 /// cysteine proteinase Mir3	-	7e-14	At5g43060	cysteine proteinase, putative / thiol protease, putative	C.G.	S.X.	Please select
0.96	0	3489	Zm.5987.1.A1_at	BM075175	cysteine protease 1	-	7e-14	At5g43060	cysteine proteinase, putative / thiol protease, putative	C.G.	S.X.	Please select
0.49	0	1063	Zm.5987.2.A1_at	BQ619148	cysteine protease 1	-	1e-11	At3g19390	cysteine proteinase, putative / thiol protease, putative	C.G.	S.X.	Please select
0.12	2e-21	103	Zm.456.1.S1_at	AF019145.2	maize insect resistance1	-	5e-2	At4g11320	cysteine proteinase, putative	C.G.	S.X.	Please select
0.19	5e-16	85	Zm.7736.1.S1_at	AF019146.1	maize insect resistance2	-	4e-3	At2g34080	cysteine proteinase, putative	C.G.	S.X.	Please select
0.17	8e-15	81	Zm.3701.1.S1_at	CF636730	cysteine protease 1	-	1e-2	At5g43060	cysteine proteinase, putative / thiol protease, putative	C.G.	S.X.	Please select
0.08	3e-11	69	Zm.9879.2.S1_at	CA404875	vignain	-	5e-5	At4g35350	XCP1 (XYLEM CYSTEINE PEPTIDASE 1)	C.G.	S.X.	Please select
0.02	5e-7	56	Zm.6083.1.A1_at	CF629354	Hypothetical protein LOC100216609	-	1e-61	At5g08300	succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative	C.G.	S.X.	Please select
0.02	1e-4	48	Zm.3612.1.A1_at	AY103746.1	hypothetical protein LOC100216585	-	2e-12	At4g14710	acireductone dioxygenase [iron(II)-requiring]/ metal ion binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	7e-14	79	Arabidopsis thaliana	At5g43060	834321	cysteine proteinase, putative / thiol protease, putative	F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:response to salt stress;C:vacuole;MOPVBAF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	2e-12	75	Glycine max	Gma.10988.3.S1_s_at	CA938233	-	-	1e-36	At5g43060	cysteine proteinase, putative / thiol protease, putative	C.G.	S.X.	Please select
0.57	0	934	Hordeum vulgare	Contig2556_s_at	Contig2556	-	-	1e-9	At5g43060	cysteine proteinase, putative / thiol protease, putative	C.G.	S.X.	Please select
0.56	0	1182	Oryza sativa	Os04g0650000	AK121500.1	-	Oryzain alpha chain precursor (EC 3.4.22.-)	2e-26	At1g47128	RD21 (responsive to dehydration 21)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.13	2e-18	95	Populus trichocarpa	Ptp.6016.1.S1_at	CV243884	hypothetical protein	-	2e-16	At1g47128	RD21 (responsive to dehydration 21)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.45	0	732	Triticum aestivum	Ta.22672.1.S1_at	CD878649	triticain alpha	-	1e-12	At1g47128	RD21 (responsive to dehydration 21)	C.G.	S.X.	Please select
0.19	6e-15	81	Vitis vinifera	1613772_s_at	BQ792569	hypothetical protein LOC100241957	-	6e-27	At5g43060	cysteine proteinase, putative / thiol protease, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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