Gene omics information

Query gene ID	Zm.5976.2.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.47	59.9	Zm.5976.2.S1_at	BG265782	-	-	3e+0	At5g40080	60S ribosomal protein-related	S.X.	H.G.	Please select
0.73	89.9	Zm.18446.1.A1_at	CO518758	-	-	3e-2	At1g29800	phosphoinositide binding / zinc ion binding	S.X.	H.G.	Please select
0.73	89.9	Zm.18416.1.A1_at	CO524449	hypothetical protein LOC100193203	-	3e-1	At3g27900	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.3204.1.S1_x_at	BM953397	hypothetical protein LOC100278241	-	3e-1	At1g70250	receptor serine/threonine kinase, putative	S.X.	H.G.	Please select
0.67	85.8	Zm.6569.9.A1_at	AW091447	40S ribosomal protein S15	-	6e-37	At5g09510	40S ribosomal protein S15 (RPS15D)	S.X.	H.G.	Please select
0.60	77.8	Zm.4805.1.A1_at	CD441355	heat shock protein 70 kDa	-	0	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	S.X.	H.G.	Please select
0.55	71.6	Zm.8751.1.A1_at	BM348137	-	-	1e+0	At3g05700	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.9	99.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.3	99.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.2	99.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.1	99.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.2	99.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.7	99.2	GSM290555	CCR mutant M1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
16.6	99.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM205369	Mo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
6.2	97.4	GSM205365	Mo17 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
5.9	97.3	GSM205373	Mo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.90	0	682	Zm.5976.2.S1_x_at	BG265782	-	-	3e+0	At5g40080	60S ribosomal protein-related	C.G.	S.X.	Please select
0.31	2e-45	180	Zm.5976.1.S1_at	AI673851	hypothetical protein LOC100279511	-	4e-5	At1g69370	CM3 (chorismate mutase 3)	C.G.	S.X.	Please select
0.31	2e-45	180	Zm.5976.1.S1_a_at	AI673851	hypothetical protein LOC100279511 /// small nuclear ribonucleoprotein G	-	4e-5	At1g69370	CM3 (chorismate mutase 3)	C.G.	S.X.	Please select
0.02	2e-2	38	Zm.4633.1.A1_at	AI737444	-	-	3e+0	At4g22740	glycine-rich protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.6706.1.A1_at	CO517894	hypothetical protein LOC100191263	-	6e-1	At5g58490	cinnamoyl-CoA reductase family	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.523.1.S1_at	AF200533.1	cellulose synthase-9	-	3e-67	At5g05170	CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1)	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.2724.1.S1_at	BQ538519	hypothetical protein LOC100193244	-	3e-13	At3g22960	PKP-ALPHA	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.648.1.S1_at	AF144079.1	S-adenosyl-L-methionine:L-methionine S-methyltransferase	-	6e-19	At5g49810	MMT	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.4311.1.S1_at	AY105462.1	-	-	1e-31	At1g29880	glycyl-tRNA synthetase / glycine--tRNA ligase	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	3e+0	32	Arabidopsis thaliana	At5g40080	834005	60S ribosomal protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	Gma.12904.1.A1_at	BE823234	-	-	3e-9	At4g26940	galactosyltransferase family protein	C.G.	S.X.	Please select
0.07	4e-13	73	Hordeum vulgare	Contig7705_at	Contig7705	-	-	1e-11	At3g29200	CM1 (CHORISMATE MUTASE 1)	C.G.	S.X.	Please select
0.08	3e-14	79	Oryza sativa	Os01g0764400	AK068983.1	-	Chorismate mutase, chloroplast precursor (EC5.4.99.5) (CM-1)	2e+0	At5g10870	ATCM2 (chorismate mutase 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	4e+0	32	Populus trichocarpa	PtpAffx.210651.1.S1_at	pmrna20891	hypothetical protein	-	2e+0	At3g51632	CPuORF44 (Conserved peptide upstream open reading frame 44)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	4e-9	61	Triticum aestivum	Ta.5448.1.S1_at	CA736403	-	-	3e-9	At3g29200	CM1 (CHORISMATE MUTASE 1)	C.G.	S.X.	Please select
0.07	2e-1	34	Vitis vinifera	1611895_at	CF210985	similar to putative chorismate mutase	-	7e-3	At1g69370	CM3 (chorismate mutase 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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