Gene omics information

Query gene ID	Zm.5965.1.A1_at
Gene name	Hypothetical protein LOC100192560
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.5965.1.A1_at	AI665966	Hypothetical protein LOC100192560	-	2e+0	At5g19140	AILP1	S.X.	H.G.	Please select
0.80	94.0	Zm.1835.1.A1_at	CK368819	cortical cell-delineating protein	-	2e+0	At2g25820	transcription factor	S.X.	H.G.	Please select
0.44	55.7	Zm.5093.1.A1_at	AI600800	GAGA-binding protein	-	4e-4	At1g14685	BPC2 (BASIC PENTACYSTEINE 2)	S.X.	H.G.	Please select
0.35	38.9	Zm.17516.1.S1_at	CF623514	hypothetical protein LOC100216611	-	3e-12	At5g63650	SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5)	S.X.	H.G.	Please select
0.22	16.9	ZmAffx.1118.2.A1_at	AW267189	-	-	8e-1	At2g27360	lipase, putative	S.X.	H.G.	Please select
0.20	14.2	Zm.5180.1.A1_at	AI612313	-	-	1e+1	At5g27090	AGL54	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
24.7	99.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
8.7	98.1	GSM258185	Oh43 11-day seedling aerial tissue biological replicate 2	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
8.2	98.0	GSM258194	Oh43 11-day seedling aerial tissue biological replicate 3	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
7.1	97.7	GSM202290	Mo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
6.9	97.7	GSM258176	Oh43 11-day seedling aerial tissue biological replicate 1	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
6.5	97.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.1	96.8	GSM202309	Mo17 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
4.7	96.5	GSM258197	Oh43xB73 11-day seedling aerial tissue biological replicate 3	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.71	3e-139	494	Zm.16173.1.A1_s_at	AY108851.1	hypothetical protein LOC100192560	-	9e-2	At2g45250	unknown protein	C.G.	S.X.	Please select
0.71	3e-139	494	Zm.16173.1.A1_at	AY108851.1	hypothetical protein LOC100192560	-	9e-2	At2g45250	unknown protein	C.G.	S.X.	Please select
0.22	3e-34	145	Zm.5945.1.S1_a_at	AY108142.1	hypothetical protein LOC100279077	-	1e+0	At3g63450	RNA binding / nucleic acid binding / nucleotide binding	C.G.	S.X.	Please select
0.13	5e-21	101	Zm.1238.1.S1_at	BE553056	-	-	3e+0	At5g48485	DIR1 (DEFECTIVE IN INDUCED RESISTANCE 1)	C.G.	S.X.	Please select
0.01	9e-1	34	ZmAffx.1524.1.S1_at	40794996-121	-	-	3e+0	At3g58020	heat shock protein binding	C.G.	S.X.	Please select
0.02	4e+0	32	Zm.9056.1.A1_at	BM334642	-	-	1e+0	At4g26055	unknown protein	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.5064.2.A1_at	CN844999	-	-	4e-5	At1g29880	glycyl-tRNA synthetase / glycine--tRNA ligase	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.5064.1.S1_at	CA399210	-	-	2e-24	At1g29880	glycyl-tRNA synthetase / glycine--tRNA ligase	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.5064.2.S1_at	CN844999	-	-	4e-5	At1g29880	glycyl-tRNA synthetase / glycine--tRNA ligase	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At5g19140	832034	AILP1	F:molecular_function unknown;P:response to aluminum ion, response to auxin stimulus;C:plasma membrane;BPOMFAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e+0	34	Glycine max	Gma.7830.1.S1_at	AW348953	-	-	1e+0	At5g01840	OFP1 (OVATE FAMILY PROTEIN 1)	C.G.	S.X.	Please select
0.10	5e-12	71	Hordeum vulgare	Contig8770_at	Contig8770	-	-	1e-3	At3g63450	RNA binding / nucleic acid binding / nucleotide binding	C.G.	S.X.	Please select
0.02	1e+0	36	Oryza sativa	OsAffx.9270.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	1e-2	42	Populus trichocarpa	PtpAffx.12194.1.A1_at	CV236690	-	-	5e-19	At5g15390	tRNA/rRNA methyltransferase (SpoU) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.11	1e-11	71	Triticum aestivum	Ta.6536.3.S1_x_at	BG607903	-	-	2e-1	At5g41960	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Vitis vinifera	1608183_at	CF207545	-	-	4e+0	At5g28950	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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