Gene omics information

Query gene ID	Zm.5960.1.A1_at
Gene name	hypothetical protein LOC100277799
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.5960.1.A1_at	AI665953	hypothetical protein LOC100277799	-	1e+1	At5g65158	-	S.X.	H.G.	Please select
0.50	65.7	Zm.5571.2.A1_a_at	AY107402.1	hypothetical protein LOC100194279	-	2e+0	At3g11530	vacuolar protein sorting 55 family protein / VPS55 family protein	S.X.	H.G.	Please select
0.44	55.7	Zm.13681.1.S1_at	AY106895.1	hypothetical protein LOC100191679	-	4e-10	At1g12370	PHR1 (PHOTOLYASE 1)	S.X.	H.G.	Please select
0.44	55.7	Zm.6636.1.A1_at	CF058269	hypothetical LOC542699	-	9e-2	At3g59280	TXR1 (THAXTOMIN A RESISTANT 1)	S.X.	H.G.	Please select
0.44	55.7	Zm.223.1.A1_at	AB024292.1	histidine-containing phosphotransfer protein	-	2e+0	At4g32860	unknown protein	S.X.	H.G.	Please select
0.25	21.3	Zm.13543.1.A1_at	AY108273.1	-	-	2e-22	At1g63160	replication factor C 40 kDa, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.0	99.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.6	99.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.4	99.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.9	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.7	99.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
9.0	98.2	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
7.9	97.9	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
7.5	97.8	GSM202290	Mo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e-3	40	Zm.4132.1.A1_at	CO529833	hypothetical protein LOC100276765	-	4e-14	At1g16520	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.5153.1.A1_at	CA400846	-	-	4e+0	At5g41960	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.2427.1.S1_at	AY108148.1	hypothetical protein LOC100217316	-	1e-3	At2g43970	La domain-containing protein	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.7648.1.A1_at	CO517814	hypothetical protein LOC100191181	-	5e-7	At5g40160	EMB506 (embryo defective 506)	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.6595.2.A1_at	AY105532.1	Hypothetical protein LOC100191605	-	1e-4	At1g25375	metallo-beta-lactamase family protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.6595.2.S1_at	AY105532.1	hypothetical protein LOC100191605	-	1e-4	At1g25375	metallo-beta-lactamase family protein	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.5770.1.S1_at	CD959897	protein disulfide isomerase	-	8e-17	At3g20560	ATPDIL5-3 (PDI-LIKE 5-3)	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.4015.1.A1_a_at	Y07959.1	60S acidic ribosomal protein P0	-	1e-51	At3g09200	60S acidic ribosomal protein P0 (RPP0B)	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.15610.1.A1_at	CD435304	hypothetical protein LOC100274799	-	8e+0	At4g02655	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	1e+1	30	Arabidopsis thaliana	At5g65158	3771559	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e-2	40	Glycine max	Gma.18022.1.S1_at	BU545911	-	-	2e-1	At4g15920	-	C.G.	S.X.	Please select
0.04	6e+0	30	Hordeum vulgare	Contig20721_s_at	Contig20721	-	-	5e-2	At2g26110	unknown protein	C.G.	S.X.	Please select
0.04	6e+0	32	Oryza sativa	OsAffx.3364.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e+0	32	Populus trichocarpa	PtpAffx.33549.1.S1_at	CF234101	hypothetical protein	-	3e-1	At2g03640	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+1	30	Triticum aestivum	TaAffx.85099.1.S1_at	CA625616	-	-	4e+0	At4g13150	unknown protein	C.G.	S.X.	Please select
0.03	9e-1	32	Vitis vinifera	1610401_at	CD713099	-	-	1e+0	At2g35635	UBQ7	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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