CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.5954.1.A1_at

Gene name repressor protein

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 85.8 Zm.5954.1.A1_at AF464905.1 repressor protein - 1e-11 At3g12480 NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11) S.X. H.G.
0.67 85.8 Zm.10284.1.S1_at BM736317 - - 2e+1 At5g38300 unknown protein S.X. H.G.
0.67 85.8 Zm.431.1.S1_at AF099112.1 sigma factor SIG6 - 2e-1 At5g61590 AP2 domain-containing transcription factor family protein S.X. H.G.
0.50 65.7 Zm.14710.1.S1_at AY232823.1 nucleosome/chromatin assembly factor group A - 1e-5 At4g26110 NAP1 S.X. H.G.
0.35 38.9 Zm.4309.1.S1_at AW052961 respiratory burst oxidase protein B - 1e-25 At1g64060 ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F) S.X. H.G.
0.33 36.0 Zm.2806.1.A1_at AW067337 - - 6e-1 At2g41660 MIZ1 (mizu-kussei 1) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.7 95.4 GSM206325 Upper pulvinus 5 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.3 94.7 GSM206313 Upper pulvinus 5 min total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.2 94.5 GSM205424 Mo17 19 DAP endosperm tissue biological replicate 2 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.1 94.3 GSM206332 Lower pulvinus 15 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.1 94.3 GSM205376 B73xMo17 13 DAP endosperm tissue biological replicate 3 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.0 94.0 GSM206319 Lower pulvinus 5 min total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
2.8 93.5 GSM206316 Upper pulvinus 60 min total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
2.8 93.5 GSM206320 Lower pulvinus 15 min total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
2.8 93.5 GSM206329 Right pulvinus control polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
2.7 93.2 GSM206331 Lower pulvinus 5 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 6e-2 38 Zm.6066.1.A1_at CF635836 - - 2e-1 At1g30690 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein C.G. S.X.
0.02 6e-2 38 Zm.4022.1.S1_a_at X57275.1 hypothetical protein LOC100276549 - 4e-1 At5g40420 OLEO2 (OLEOSIN 2) C.G. S.X.
0.02 1e+0 34 Zm.9374.1.A1_at BM268403 - - 8e-2 At3g12870 unknown protein C.G. S.X.
0.01 1e+0 34 Zm.198.1.S1_at AB016064.1 mitochondrial phosphate transporter - 2e-51 At5g14040 mitochondrial phosphate transporter C.G. S.X.
0.01 4e+0 32 Zm.5875.1.A1_at CA402986 hypothetical protein LOC100193662 - 7e+0 At3g15640 cytochrome c oxidase family protein C.G. S.X.
0.01 4e+0 32 Zm.5646.2.A1_x_at AW257823 hypothetical protein LOC100191650 - 3e-41 At1g04750 VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) C.G. S.X.
0.01 4e+0 32 Zm.3978.1.A1_at BQ538157 - - 3e-17 At1g70320 UPL2 (UBIQUITIN-PROTEIN LIGASE 2) C.G. S.X.
0.01 4e+0 32 Zm.3978.1.A1_a_at BQ538157 - - 3e-17 At1g70320 UPL2 (UBIQUITIN-PROTEIN LIGASE 2) C.G. S.X.
0.01 4e+0 32 Zm.18340.1.A1_at CO526955 hypothetical protein LOC100278408 - 8e-16 At1g34320 unknown protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 1e-11 71 Arabidopsis thaliana At3g12480 820427 NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFOB - - - C.G. S.X.
0.19 2e-29 131 Glycine max GmaAffx.81559.1.S1_at BI425279 - - 2e-35 At3g12480 NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11) C.G. S.X.
0.61 2e-135 482 Hordeum vulgare Contig13079_at Contig13079 - - 9e-12 At3g12480 NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11) C.G. S.X.
0.60 3e-149 529 Oryza sativa Os11g0544700 AF464904.1 - Repressor protein 6e-7 At3g12480 NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11) C.G. S.X.
0.07 1e-8 61 Populus trichocarpa PtpAffx.205015.1.S1_at pmrna9921 hypothetical protein - 8e-12 At3g12480 NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11) C.G. S.X.
0.57 1e-131 470 Triticum aestivum Ta.8971.1.S1_at CA727887 - - 2e-10 At3g12480 NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11) C.G. S.X.
0.02 7e-1 34 Vitis vinifera 1617411_at BQ797398 hypothetical protein LOC100244514 - 2e-2 At5g57150 basic helix-loop-helix (bHLH) family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage