CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.5914.1.A1_at

Gene name nac4 protein

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.86 96.3 Zm.5914.1.A1_at CA402103 nac4 protein - 4e-12 At3g04060 anac046 (Arabidopsis NAC domain containing protein 46) S.X. H.G.
0.29 28.1 ZmAffx.872.1.A1_at AI770770 Hypothetical protein LOC100193843 - 1e+1 At5g37475 translation initiation factor-related S.X. H.G.
0.27 24.6 Zm.13927.1.A1_at U41079.1 - - 1e+0 At3g47295 unknown protein S.X. H.G.
0.22 16.9 Zm.6399.1.A1_at CF630978 hypothetical protein LOC100277208 - 9e-2 At2g38646 unknown protein S.X. H.G.
0.21 15.5 Zm.3893.1.A1_at CF623496 - - 2e-1 At2g32160 - S.X. H.G.
0.21 15.5 Zm.1115.1.A1_at AY104250.1 - - 1e+0 At4g00210 LBD31 (LOB DOMAIN-CONTAINING PROTEIN 31) S.X. H.G.
0.20 14.2 Zm.17199.1.A1_at CK370582 hypothetical protein LOC100191930 - 2e-10 At3g27960 kinesin light chain-related S.X. H.G.
0.14 7.7 ZmAffx.745.1.A1_at AI745776 - - 3e+0 At5g17650 glycine/proline-rich protein S.X. H.G.
0.14 7.7 Zm.17344.1.S1_at CK370586 - - 4e+0 At4g34050 caffeoyl-CoA 3-O-methyltransferase, putative S.X. H.G.
0.11 5.3 Zm.943.1.A1_at BF729547 CID11 - 1e+0 At5g42240 scpl42 (serine carboxypeptidase-like 42) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
15.5 99.0 GSM205423 B73xMo17 19 DAP endosperm tissue biological replicate 1 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
14.1 98.8 GSM205422 Mo17xB73 19 DAP endosperm tissue biological replicate 1 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
12.9 98.7 GSM205436 B73xMo17 19 DAP endosperm tissue biological replicate 3 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
12.8 98.7 GSM205421 B73 19 DAP endosperm tissue biological replicate 1 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
12.8 98.7 GSM205429 B73xMo17 19 DAP endosperm tissue biological replicate 2 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
12.6 98.7 GSM205433 B73 19 DAP endosperm tissue biological replicate 3 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
11.7 98.6 GSM205425 B73 19 DAP endosperm tissue biological replicate 2 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
11.3 98.5 GSM205424 Mo17 19 DAP endosperm tissue biological replicate 2 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
10.7 98.5 GSM205434 Mo17xB73 19 DAP endosperm tissue biological replicate 3 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
10.6 98.4 GSM205420 Mo17 19 DAP endosperm tissue biological replicate 1 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 6e-12 71 Zm.4437.1.S1_at CO522989 cuc3 protein - 2e-1 At1g76420 CUC3 (CUP SHAPED COTYLEDON3) C.G. S.X.
0.06 1e-6 54 Zm.10172.1.A1_at CO532781 hypothetical protein LOC100273092 - 2e-1 At1g01720 ATAF1 C.G. S.X.
0.06 2e-2 40 Zm.5882.1.A1_at AI637237 - - 2e-1 At1g52880 NAM (NO APICAL MERISTEM) C.G. S.X.
0.01 2e-2 40 Zm.5524.1.S1_at AY104178.1 hypothetical protein LOC100277069 - 4e-3 At4g23800 high mobility group (HMG1/2) family protein C.G. S.X.
0.01 2e-2 40 Zm.3701.1.S1_at CF636730 cysteine protease 1 - 1e-2 At5g43060 cysteine proteinase, putative / thiol protease, putative C.G. S.X.
0.01 9e-2 38 Zm.2131.2.A1_at BM333872 NAC domain-containing protein 68 - 3e-2 At1g01720 ATAF1 C.G. S.X.
0.01 3e-1 36 Zm.65.1.S1_at AJ007366.1 calcium-dependent protein kinase - 2e-12 At5g04870 CPK1 (CALCIUM DEPENDENT PROTEIN KINASE 1) C.G. S.X.
0.01 3e-1 36 Zm.34.5.A1_at AI734535 - - 4e-2 At2g36950 heavy-metal-associated domain-containing protein C.G. S.X.
0.01 3e-1 36 Zm.34.5.A1_x_at AI734535 - - 4e-2 At2g36950 heavy-metal-associated domain-containing protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 4e-12 73 Arabidopsis thaliana At3g04060 819561 anac046 (Arabidopsis NAC domain containing protein 46) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P - - - C.G. S.X.
0.07 1e-3 46 Glycine max GmaAffx.64710.1.S1_at BM528395 NAC domain protein - 3e-8 At5g39610 ATNAC6 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 6) C.G. S.X.
0.13 8e-27 121 Hordeum vulgare Contig9757_at Contig9757 - - 9e-16 At3g04060 anac046 (Arabidopsis NAC domain containing protein 46) C.G. S.X.
0.14 3e-23 111 Oryza sativa Os02g0579000 AB028180.1 - No apical meristem (NAM) protein domain containingprotein 5e-14 At3g04060 anac046 (Arabidopsis NAC domain containing protein 46) C.G. S.X.
0.13 2e-5 52 Populus trichocarpa PtpAffx.205898.1.S1_at pmrna11691 NAC domain protein, IPR003441 - 2e-4 At5g39610 ATNAC6 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 6) C.G. S.X.
0.13 1e-21 105 Triticum aestivum TaAffx.11509.1.S1_at CD904811 - - 1e-8 At5g18270 ANAC087 C.G. S.X.
0.03 2e-1 36 Vitis vinifera 1621723_at CA817798 hypothetical protein LOC100248744 - 6e-14 At1g61110 anac025 (Arabidopsis NAC domain containing protein 25) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage