CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.5887.1.S1_at

Gene name hypothetical protein LOC100193921

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.84 95.8 Zm.5887.1.S1_at AI664885 hypothetical protein LOC100193921 - 4e-1 At3g48590 NF-YC1 (NUCLEAR FACTOR Y, SUBUNIT C1) S.X. H.G.
0.36 41.3 ZmAffx.913.1.A1_at AI770960 - - 8e-1 At4g20460 NAD-dependent epimerase/dehydratase family protein S.X. H.G.
0.35 38.9 Zm.6288.1.A1_at CD990969 Nucleotide sugar translocator BT2B - 5e-7 At4g32400 SHS1 (SODIUM HYPERSENSITIVE 1) S.X. H.G.
0.31 31.6 Zm.3886.1.S1_at CK348157 - - 7e+0 At5g28620 protein kinase C-related S.X. H.G.
0.27 24.6 Zm.14107.2.A1_at AI770963 - - 8e-1 At3g56880 VQ motif-containing protein S.X. H.G.
0.27 24.6 Zm.13757.1.S1_at AY105827.1 - - 1e-1 At1g70590 F-box family protein S.X. H.G.
0.20 14.2 Zm.14784.1.A1_at BG841481 - - 3e+0 At3g01175 - S.X. H.G.
0.14 7.7 Zm.1753.2.A1_at AY109871.1 NOD26-like membrane integral protein ZmNIP2-1 - 4e-1 At3g06750 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.09 4.0 Zm.10523.1.A1_at CF627457 hypothetical protein LOC100273216 - 3e-4 At4g17670 senescence-associated protein-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
24.0 99.5 GSM253263 ZM_4d_Mock_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
19.5 99.3 GSM253262 ZM_4d_Mock_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
15.7 99.0 GSM253264 ZM_4d_Mock_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
15.6 99.0 GSM253276 ZM_8d_Mock_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
12.5 98.7 GSM253275 ZM_8d_Mock_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
11.5 98.6 GSM253274 ZM_8d_Mock_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
10.7 98.5 GSM253258 ZM_2d_Mock_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
10.6 98.4 GSM253257 ZM_2d_Mock_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
9.4 98.3 GSM253256 ZM_2d_Mock_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
5.1 96.8 GSM253265 ZM_4d_SG200_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 36 Zm.4672.1.S1_at CF035272 hypothetical protein LOC100276360 - 2e-1 At5g62850 AtVEX1 (VEGETATIVE CELL EXPRESSED1) C.G. S.X.
0.02 8e-1 34 Zm.4966.1.A1_at CA401140 hypothetical protein LOC100278743 - 5e+0 At5g46860 VAM3 C.G. S.X.
0.01 8e-1 34 Zm.4792.1.S1_at CO524397 hypothetical protein LOC100216840 - 3e-1 At1g53910 RAP2.12 C.G. S.X.
0.01 3e+0 32 Zm.6916.1.S1_at AW067358 hypothetical protein LOC100273981 - 9e-13 At5g66750 CHR1 (CHROMATIN REMODELING 1) C.G. S.X.
0.01 3e+0 32 Zm.494.1.A1_a_at AF236368.1 prohibitin1 - 2e-48 At4g28510 ATPHB1 (PROHIBITIN 1) C.G. S.X.
0.01 3e+0 32 Zm.494.1.A2_at AF236368.1 prohibitin1 - 2e-48 At4g28510 ATPHB1 (PROHIBITIN 1) C.G. S.X.
0.02 3e+0 32 Zm.4360.1.A1_at AI712029 hypothetical protein LOC100279918 - 4e-1 At1g13755 - C.G. S.X.
0.02 3e+0 32 Zm.4139.1.A1_at AI855140 - - 3e-1 At5g06610 unknown protein C.G. S.X.
0.01 3e+0 32 Zm.231.1.S1_at CK827218 invertase2 - 3e-4 At1g62660 beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-1 36 Arabidopsis thaliana At3g48590 824019 NF-YC1 (NUCLEAR FACTOR Y, SUBUNIT C1) Encodes a protein with similarity to a subunit of the CCAAT promoter motif binding complex of yeast.One of two members of this class (HAP5A) and expressed in vegetative and reproductive tissues. - - - C.G. S.X.
0.04 2e-1 38 Glycine max Gma.15740.1.A1_at CD404757 - - 2e-1 At4g19150 ankyrin repeat family protein C.G. S.X.
0.34 5e-61 234 Hordeum vulgare Contig23998_at Contig23998 - - 4e+0 At3g21150 zinc finger (B-box type) family protein C.G. S.X.
0.36 9e-78 291 Oryza sativa Os02g0726600 AK064213.1 - Conserved hypothetical protein 5e+0 At5g67060 HEC1 (HECATE 1) C.G. S.X.
0.04 2e+0 34 Populus trichocarpa PtpAffx.43377.1.A1_s_at CV274860 hypothetical protein - 5e-1 At5g07930 MCT2 (mei2 C-Terminal RRM only like 2) C.G. S.X.
0.03 1e-1 38 Triticum aestivum Ta.314.1.S1_at BF482988 - - 3e-2 At2g24870 self-incompatibility protein-related C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1620738_at CD711276 hypothetical protein LOC100247142 - 1e-4 At4g08280 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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