Gene omics information

Query gene ID	Zm.5881.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.70	87.0	Zm.5881.1.A1_at	CA401815	-	-	9e-8	At2g16640	TOC132 (MULTIMERIC TRANSLOCON COMPLEX IN THE OUTER ENVELOPE MEMBRANE 132)	S.X.	H.G.	Please select
0.32	33.4	Zm.4852.1.A1_at	CO527893	hypothetical protein LOC100192969	-	3e-2	At4g39000	AtGH9B17 (Arabidopsis thaliana glycosyl hydrolase 9B17)	S.X.	H.G.	Please select
0.30	29.8	Zm.14325.1.S1_at	AY104177.1	hypothetical protein LOC100279850	-	2e-1	At3g12550	XH/XS domain-containing protein / XS zinc finger domain-containing protein	S.X.	H.G.	Please select
0.29	28.1	ZmAffx.995.1.S1_at	AI855362	Sister of ramosa 3	-	2e-6	At1g22210	trehalose-6-phosphate phosphatase, putative	S.X.	H.G.	Please select
0.23	18.6	Zm.17844.1.A1_at	BG873843	hypothetical protein LOC100273210	-	1e+0	At4g39150	DNAJ heat shock N-terminal domain-containing protein	S.X.	H.G.	Please select
0.23	18.6	Zm.18135.1.A1_at	CN845300	-	-	4e+0	Atmg01410	-	S.X.	H.G.	Please select
0.22	16.9	Zm.9008.1.A1_at	AF371265.1	delta zein structural18 /// prolamin /// prolamin	-	2e+0	At5g61680	pectinesterase family protein	S.X.	H.G.	Please select
0.20	14.2	Zm.18298.1.A1_at	CO531061	senescence-associated protein	-	1e+0	At3g54130	josephin family protein	S.X.	H.G.	Please select
0.19	12.8	Zm.9956.1.A1_at	BM076038	-	-	1e+1	At4g30993	unknown protein	S.X.	H.G.	Please select
0.19	12.8	Zm.2267.1.S1_at	AY105804.1	-	-	7e-7	At1g79860	ROPGEF12 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 12)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.1	95.9	GSM205436	B73xMo17 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.8	95.5	GSM253244	ZM_12h_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
3.7	95.4	GSM253251	ZM_24h_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
3.7	95.4	GSM205433	B73 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.6	95.2	GSM205434	Mo17xB73 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.6	95.2	GSM205425	B73 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.5	95.1	GSM205431	Mo17 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.5	95.1	GSM253248	ZM_12h_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
3.4	94.9	GSM253247	ZM_12h_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
3.4	94.9	GSM253252	ZM_24h_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.57	0	1552	Zm.10794.1.A1_at	CA404969	-	-	6e-1	At4g02510	TOC159 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 159)	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.7309.1.S1_s_at	AF384036.1	nucleosome/chromatin assembly factor A /// nucleosome/chromatin assembly factor A	-	2e-3	At1g18800	NRP2 (NAP1-RELATED PROTEIN 2)	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.7309.1.S1_at	AF384036.1	nucleosome/chromatin assembly factor A	-	2e-3	At1g18800	NRP2 (NAP1-RELATED PROTEIN 2)	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.6116.1.A1_at	CK347339	-	-	9e-16	At3g02320	RNA binding / tRNA (guanine-N2-)-methyltransferase	C.G.	S.X.	Please select
0.01	5e-1	36	ZmAffx.1042.1.A1_at	AI881783	-	-	3e+0	At2g34700	pollen Ole e 1 allergen and extensin family protein	C.G.	S.X.	Please select
0.01	5e-1	36	ZmAffx.1042.1.S1_at	AI881783	-	-	3e+0	At2g34700	pollen Ole e 1 allergen and extensin family protein	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.7757.1.S1_at	BM079780	mitochondrion protein	-	2e-11	At5g37530	thiF family protein	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.4273.1.A1_at	CF626426	hypothetical protein LOC100217188	-	6e-15	At1g79930	HSP91	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.17567.1.A1_at	CK369672	-	-	2e-14	At1g45150	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	9e-8	59	Arabidopsis thaliana	At2g16640	816165	TOC132 (MULTIMERIC TRANSLOCON COMPLEX IN THE OUTER ENVELOPE MEMBRANE 132)	F:transmembrane receptor activity;P:protein targeting to chloroplast;C:chloroplast outer membrane, membrane;OMFBPVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e-3	46	Glycine max	GmaAffx.91256.1.S1_at	CF806981	-	-	6e-9	At4g02510	TOC159 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 159)	C.G.	S.X.	Please select
0.56	0	1076	Hordeum vulgare	Contig6980_at	Contig6980	-	-	2e-4	At4g02510	TOC159 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 159)	C.G.	S.X.	Please select
0.56	0	1951	Oryza sativa	Os05g0151400	AK102924.1	-	Chloroplast protein import component Toc86/159domain containing protein	2e-3	At4g02510	TOC159 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 159)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	5e-4	48	Populus trichocarpa	PtpAffx.218659.1.S1_at	pmrna34356	hypothetical protein	-	5e-3	At4g02510	TOC159 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 159)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.20	1e-99	365	Triticum aestivum	TaAffx.31054.1.S1_at	CA619964	-	-	1e-2	At4g18930	cyclic phosphodiesterase	C.G.	S.X.	Please select
0.04	2e-8	59	Vitis vinifera	1612893_at	CF513602	hypothetical protein LOC100243553	-	2e-18	At4g02510	TOC159 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 159)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage