Gene omics information

Query gene ID	Zm.587.1.A1_at
Gene name	DNA cytosine methyltransferase MET2a
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.587.1.A1_at	AF243043.1	DNA cytosine methyltransferase MET2a	-	4e-1	At1g69770	CMT3 (chromomethylase 3)	S.X.	H.G.	Please select
0.50	65.7	Zm.811.1.A1_at	CA405132	cathepsin B-like cysteine proteinase 3	-	2e-23	At1g02305	cathepsin B-like cysteine protease, putative	S.X.	H.G.	Please select
0.38	44.2	Zm.8122.1.A1_at	BM736458	hypothetical protein LOC100274535	-	4e-73	At2g44610	RAB6A	S.X.	H.G.	Please select
0.36	41.3	Zm.1359.1.S1_at	L20139.1	male gametophyte-specific2	-	3e-6	At3g01270	pectate lyase family protein	S.X.	H.G.	Please select
0.31	31.6	Zm.7976.1.S1_at	BM080696	hypothetical protein LOC100217261	-	2e-46	At5g37680	ATARLA1A (ADP-ribosylation factor-like A1A)	S.X.	H.G.	Please select
0.13	6.8	Zm.5960.1.A1_at	AI665953	hypothetical protein LOC100277799	-	1e+1	At5g65158	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.2	98.8	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
11.1	98.5	GSM202299	Mo17xB73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
9.9	98.3	GSM202306	Mo17xB73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
9.5	98.3	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
8.7	98.1	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
8.7	98.1	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
8.6	98.1	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
8.2	98.0	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
7.6	97.9	GSM202296	B73xMo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
7.5	97.8	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.77	0	2904	Zm.599.1.S1_a_at	AY093416.1	chromomethylase	-	2e+0	At5g49330	AtMYB111 (myb domain protein 111)	C.G.	S.X.	Please select
0.77	0	2904	Zm.599.1.S1_x_at	AY093416.1	chromomethylase	-	2e+0	At5g49330	AtMYB111 (myb domain protein 111)	C.G.	S.X.	Please select
0.24	0	734	Zm.599.2.A1_at	AY111360.1	Chromomethylase	-	2e+0	At3g30350	unknown protein	C.G.	S.X.	Please select
0.27	0	734	Zm.599.2.S1_a_at	AY111360.1	chromomethylase	-	2e+0	At3g30350	unknown protein	C.G.	S.X.	Please select
0.01	4e-2	40	Zm.12357.1.A1_at	CB381715	hypothetical protein LOC100272551	-	3e-5	At5g02030	RPL (REPLUMLESS)	C.G.	S.X.	Please select
0.01	2e-1	38	Zm.3627.1.A1_at	BM334459	RING-H2 finger protein ATL2B	-	3e+0	At5g57750	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.01	2e-1	38	Zm.19325.1.S1_at	CO528653	hypothetical protein LOC100191211	-	5e-5	At1g45249	ABF2 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 2)	C.G.	S.X.	Please select
0.01	7e-1	36	Zm.6299.1.A1_at	CO526142	hypothetical protein LOC100217283	-	3e-3	At5g56170	-	C.G.	S.X.	Please select
0.01	7e-1	36	Zm.3476.1.A1_at	BQ538179	-	-	8e-2	At5g36890	BGLU42 (BETA GLUCOSIDASE 42)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-1	38	Arabidopsis thaliana	At1g69770	843313	CMT3 (chromomethylase 3)	Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	1e-1	40	Glycine max	GmaAffx.42228.1.S1_at	BQ610340	-	-	2e-4	At1g80740	CMT1 (CHROMOMETHYLASE 1)	C.G.	S.X.	Please select
0.18	6e-48	192	Hordeum vulgare	Contig15470_at	Contig15470	-	-	2e+0	At3g55740	PROT2 (PROLINE TRANSPORTER 2)	C.G.	S.X.	Please select
0.44	1e-79	299	Oryza sativa	Os10g0104900	AK112062.1	-	Chromomethylase 3	1e-5	At1g69770	CMT3 (chromomethylase 3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	2e-4	50	Populus trichocarpa	PtpAffx.200049.1.S1_at	pmrna92	DNA methyltransferase	-	2e-8	At1g69770	CMT3 (chromomethylase 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.38	0	773	Triticum aestivum	Ta.27527.1.A1_at	BT009166.1	-	-	2e+0	At5g54165	unknown protein	C.G.	S.X.	Please select
0.04	5e-7	56	Vitis vinifera	1615756_at	CD717221	-	-	3e-1	At1g80740	CMT1 (CHROMOMETHYLASE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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