Gene omics information

Query gene ID Zm.5851.6.S1_x_at
Gene name MADS box protein
Organism Zea mays


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6179.5Zm.5851.6.S1_x_atL46399.1MADS box protein-2e-8At4g18960AG (AGAMOUS)S.X.H.G.
0.6785.8Zm.18394.1.A1_atCO534001ATP-dependent Clp protease ATP-binding subunit clpX-1e-27At5g53350CLPXS.X.H.G.
0.6179.5Zm.19018.1.A1_atCO532922hypothetical protein LOC100193009-3e+0At4g38120bindingS.X.H.G.
0.5674.4Zm.7082.2.S1_atCO523732hypothetical protein LOC100194344-1e-23At3g05590RPL18 (RIBOSOMAL PROTEIN L18)S.X.H.G.
0.5065.7Zm.505.2.S1_a_atAI665681glucose translocator1-8e-1Atcg00800-S.X.H.G.
0.4658.4Zm.5401.1.S1_atAI065471pollen-specific protein C13-5e-1At4g17500ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1)S.X.H.G.
0.2318.6Zm.9357.1.A1_atBM268323--1e+0At4g36060basic helix-loop-helix (bHLH) family proteinS.X.H.G.
0.147.7Zm.8598.1.A1_atBM075029--6e+0At5g30520unknown proteinS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
34.099.9GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.599.7GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.699.6GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.998.8GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.298.6GSM290554WS2 with array type maize from AffymetrixGSE11531Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
11.398.5GSM290556CCR mutant M2 with array type maize from AffymetrixGSE11531Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
9.998.3GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.698.3GSM290555CCR mutant M1 with array type maize from AffymetrixGSE11531Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
9.698.3GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.498.3GSM290553WS1 with array type maize from AffymetrixGSE11531Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
1.0001433Zm.5851.6.A1_a_atL46399.1MADS box protein-2e-8At4g18960AG (AGAMOUS)C.G.S.X.
0.510833Zm.5851.8.A1_a_atX85334.1MADS box protein-1e-7At4g18960AG (AGAMOUS)C.G.S.X.
0.510833Zm.5851.8.A1_x_atX85334.1MADS box protein-1e-7At4g18960AG (AGAMOUS)C.G.S.X.
0.860833Zm.5851.8.S1_a_atX85334.1ZEM3-1e-7At4g18960AG (AGAMOUS)C.G.S.X.
0.560801Zm.5851.7.A1_a_atX85335.1ZEM3-7e-6At4g18960AG (AGAMOUS)C.G.S.X.
0.440708Zm.5851.10.A1_a_atX85336.1ZEM3-2e-9At4g18960AG (AGAMOUS)C.G.S.X.
0.252e-145513Zm.5851.11.A1_a_atCO527835MADS box protein-3e-16At4g37550formamidase, putative / formamide amidohydrolase, putativeC.G.S.X.
0.252e-145513Zm.5851.11.A1_x_atCO527835hypothetical protein LOC100217054-3e-16At4g37550formamidase, putative / formamide amidohydrolase, putativeC.G.S.X.
0.252e-145513Zm.5851.11.A1_atCO527835hypothetical protein LOC100217054-3e-16At4g37550formamidase, putative / formamide amidohydrolase, putativeC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.182e-859Arabidopsis thalianaAt4g18960827631AG (AGAMOUS)Floral homeotic gene encoding a MADS domain transcription factor. Specifies floral meristem and carpel and stamen identity. Binds CArG box sequences. It is the only C function gene. It interacts genetically with the other homeotic genes to specify the floral organs.---C.G.S.X.
0.122e-344Glycine maxGmaAffx.79004.1.S1_atBU761215MADS-box protein-2e-17At4g18960AG (AGAMOUS)C.G.S.X.
0.164e-64244Hordeum vulgareContig11029_atContig11029--2e-10At2g42830SHP2 (SHATTERPROOF 2)C.G.S.X.
0.283e-49196Oryza sativaOsAffx.23186.1.S1_at---0C.G.S.X.
0.113e-240Populus trichocarpaPtpAffx.162863.1.S1_atBU882965hypothetical protein-1e-6At3g58780SHP1 (SHATTERPROOF 1)C.G.S.X.
0.343e-45182Triticum aestivumTaAffx.112563.1.S1_atCA622906--3e-1At3g02310SEP2 (SEPALLATA 2)C.G.S.X.
0.131e-22105Vitis vinifera1607973_atCB969561--7e-4At4g18960AG (AGAMOUS)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage