Gene omics information

Query gene ID	Zm.5851.15.A1_x_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.48	61.3	Zm.5851.15.A1_x_at	AI759130	-	-	9e-1	At2g04031	-	S.X.	H.G.	Please select
0.77	92.1	Zm.5989.1.A1_at	AI666066	-	-	3e-1	At4g24960	ATHVA22D	S.X.	H.G.	Please select
0.53	69.1	Zm.19299.1.A1_at	BM074654	-	-	4e-3	At4g09270	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.13523.1.A1_at	AY108425.1	-	-	6e-1	At5g59470	PQ-loop repeat family protein / transmembrane family protein	S.X.	H.G.	Please select
0.47	59.9	Zm.6306.2.A1_at	AI691326	Protein kinase catalytic domain	-	1e-10	At1g35670	ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2)	S.X.	H.G.	Please select
0.47	59.9	Zm.18516.1.A1_a_at	CO526437	-	-	2e+0	At5g55570	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
21.7	99.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8	98.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.0	98.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.76	0	664	Zm.5851.15.S1_a_at	AI759130	-	-	9e-1	At2g04031	-	C.G.	S.X.	Please select
0.76	0	664	Zm.5851.15.S1_x_at	AI759130	-	-	9e-1	At2g04031	-	C.G.	S.X.	Please select
0.87	0	664	Zm.5851.15.A1_at	AI759130	-	-	9e-1	At2g04031	-	C.G.	S.X.	Please select
0.45	4e-115	412	Zm.5851.14.A1_at	BE453943	-	-	9e-2	At1g75270	DHAR2 (DEHYDROASCORBATE REDUCTASE 2)	C.G.	S.X.	Please select
0.45	4e-115	412	Zm.5851.14.S1_at	BE453943	-	-	9e-2	At1g75270	DHAR2 (DEHYDROASCORBATE REDUCTASE 2)	C.G.	S.X.	Please select
0.15	6e-43	173	Zm.16189.3.A1_at	CD484948	hypothetical protein LOC100276118	-	4e-1	At2g40290	eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative	C.G.	S.X.	Please select
0.15	6e-43	173	Zm.16189.3.S1_at	CD484948	-	-	4e-1	At2g40290	eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative	C.G.	S.X.	Please select
0.21	1e-25	115	Zm.14852.1.A1_at	AI857162	-	-	2e-11	At3g57290	EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E)	C.G.	S.X.	Please select
0.21	1e-25	115	Zm.14852.1.A1_x_at	AI857162	-	-	2e-11	At3g57290	EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	9e-1	34	Arabidopsis thaliana	At2g04031	5007867	-	Encodes a ECA1 gametogenesis related family protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	3e-1	36	Glycine max	Gma.12757.1.A1_at	CD396749	-	-	2e+0	At3g50925	-	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	HP01B12w_at	HP01B12w	-	-	5e+0	At5g42640	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.03	3e-5	50	Oryza sativa	Os11g0637800	CB682849	-	1-acylcerol-3-phosphate acyltransferase-likeprotein	1e-15	At3g57650	LPAT2	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Populus trichocarpa	PtpAffx.151124.1.S1_s_at	BU888639	hypothetical protein	-	1e-13	At3g57650	LPAT2	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.13	3e-25	115	Triticum aestivum	TaAffx.85885.1.S1_at	CA618769	-	-	4e+0	At5g52720	metal ion binding	C.G.	S.X.	Please select
0.04	4e+0	30	Vitis vinifera	1610840_at	CK136883.1	-	-	1e-2	At1g12663	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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