Gene omics information

Query gene ID	Zm.5850.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	71.6	Zm.5850.1.A1_at	CF623894	-	-	2e-7	At4g04910	NSF (N-ethylmaleimide sensitive factor)	S.X.	H.G.	Please select
0.91	99.0	Zm.6567.1.A1_at	BM072999	-	-	2e+0	At5g41030	TCP family transcription factor, putative	S.X.	H.G.	Please select
0.60	77.8	Zm.4027.2.A1_at	CO527250	hypothetical protein LOC100272558	-	6e-1	At1g49600	ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a)	S.X.	H.G.	Please select
0.60	77.8	Zm.7519.1.A1_at	BM337506	-	-	1e+0	At1g70895	CLE17 (CLAVATA3/ESR-RELATED 17)	S.X.	H.G.	Please select
0.59	76.1	Zm.5872.1.A1_at	CF037565	-	-	8e-14	At1g73720	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.57	75.1	Zm.14463.1.A1_at	BM336602	hypothetical protein LOC100194081	-	2e+0	At4g22380	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.8	97.2	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.4	96.2	GSM206326	Upper pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.9	95.7	GSM206332	Lower pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.6	95.2	GSM206329	Right pulvinus control polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.3	94.7	GSM206327	Upper pulvinus 30 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.3	94.7	GSM290555	CCR mutant M1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
3.2	94.5	GSM206331	Lower pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.2	94.5	GSM290554	WS2 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
3.2	94.5	GSM206324	Upper pulvinus 2 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.0	94.0	GSM206334	Lower pulvinus 60 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	1e-56	220	Zm.8100.3.A1_at	AY110408.1	hypothetical protein LOC100193565	-	4e-1	At4g23090	unknown protein	C.G.	S.X.	Please select
0.14	1e-56	220	Zm.8100.3.S1_at	AY110408.1	-	-	4e-1	At4g23090	unknown protein	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.3350.1.A1_a_at	BM266649	U6 snRNA-associated Sm-like protein LSm4	-	4e-29	At5g27720	emb1644 (embryo defective 1644)	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.3350.1.A1_x_at	BM266649	DC2 protein	-	4e-29	At5g27720	emb1644 (embryo defective 1644)	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.3350.2.A1_at	CA400679	U6 snRNA-associated Sm-like protein LSm4	-	7e-34	At5g27720	emb1644 (embryo defective 1644)	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.3350.1.A1_at	BM266649	DC2 protein	-	4e-29	At5g27720	emb1644 (embryo defective 1644)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.6587.1.A1_at	BM378727	acyl CoA synthetase	-	1e-5	At1g64400	long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.6555.2.S1_at	CD446565	hypothetical protein LOC100273907	-	1e-31	At3g11710	ATKRS-1 (ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 1)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.3721.1.S1_at	CK370059	-	-	1e-2	At3g28430	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-7	57	Arabidopsis thaliana	At4g04910	825830	NSF (N-ethylmaleimide sensitive factor)	N-ethylmaleimide sensitive factor	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.26	1e-31	139	Glycine max	Gma.7352.1.S1_at	BI701939	-	-	2e-56	At4g04910	NSF (N-ethylmaleimide sensitive factor)	C.G.	S.X.	Please select
0.44	1e-167	589	Hordeum vulgare	Contig8227_at	Contig8227	-	-	2e-3	At4g04910	NSF (N-ethylmaleimide sensitive factor)	C.G.	S.X.	Please select
0.36	0	878	Oryza sativa	Os05g0519400	AK072976.1	-	N-ethylmaleimide sensitive factor NSF (Fragment)	2e-73	At4g04910	NSF (N-ethylmaleimide sensitive factor)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.19	1e-40	169	Populus trichocarpa	PtpAffx.215506.1.S1_at	pmrna29742	hypothetical protein	-	0	At4g04910	NSF (N-ethylmaleimide sensitive factor)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.29	2e-146	519	Triticum aestivum	TaAffx.31272.1.S1_at	CA617934	-	-	5e-1	At3g56670	-	C.G.	S.X.	Please select
0.02	9e-1	34	Vitis vinifera	1614553_at	CF515978	hypothetical protein LOC100246531	-	6e-37	At1g17130	cell cycle control protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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