Gene omics information

Query gene ID Zm.5837.1.S1_at
Gene name photosystem II reaction center W protein
Organism Zea mays


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.7188.2Zm.5837.1.S1_atAI649832photosystem II reaction center W protein-6e+0At5g66710protein kinase, putativeS.X.H.G.
0.4658.4Zm.4160.1.A1_atCF243936indole-3-acetate beta-glucosyltransferase-1e-2At4g15550IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE)S.X.H.G.
0.4455.7Zm.19145.1.A1_atCA404085ATPase1-2e-59At1g75630AVA-P4S.X.H.G.
0.4048.5Zm.10100.1.A1_atBM382599hypothetical protein LOC100277526-5e-6At1g50900-S.X.H.G.
0.2521.3Zm.17630.1.A1_atCK348094--4e-1At1g06760histone H1, putativeS.X.H.G.
0.2521.3Zm.13681.1.S1_atAY106895.1hypothetical protein LOC100191679-4e-10At1g12370PHR1 (PHOTOLYASE 1)S.X.H.G.
0.158.6Zm.17737.1.S1_atCK370687--6e-3At5g28560unknown proteinS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
5.697.1GSM320446protocol: mRNA - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.396.9GSM320445protocol: mRNA - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.396.9GSM320444protocol: mRNA - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.296.9GSM320439protocol: mRNA - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.196.8GSM320438protocol: mRNA - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.996.7GSM253263ZM_4d_Mock_3inf_IIGSE10023Maize gene expression during infection with Ustilago maydis
4.796.5GSM320441protocol: mRNA - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.696.4GSM320440protocol: mRNA - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.496.2GSM253264ZM_4d_Mock_3inf_IIIGSE10023Maize gene expression during infection with Ustilago maydis
4.396.1GSM253258ZM_2d_Mock_3inf_IIIGSE10023Maize gene expression during infection with Ustilago maydis
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.218e-56216Zm.710.1.A1_atAY103930.1--6e+0At2g18210unknown proteinC.G.S.X.
0.012e-136Zm.8111.1.S1_atCD972041--7e-5At1g75680AtGH9B7 (Arabidopsis thaliana glycosyl hydrolase 9B7)C.G.S.X.
0.022e-136Zm.1737.1.A1_atAY104832.1elicitor-responsive protein 3-8e+0At4g17640CKB2C.G.S.X.
0.022e-136Zm.10590.1.S1_atBM378591hypothetical protein LOC100194249-6e-17At1g30510ATRFNR2 (ROOT FNR 2)C.G.S.X.
0.022e-136Zm.10590.1.S1_x_atBM378591hypothetical protein LOC100194249-6e-17At1g30510ATRFNR2 (ROOT FNR 2)C.G.S.X.
0.036e-134Zm.9069.1.A1_atBM348516hypothetical protein LOC100216825-7e-5At3g03070NADH-ubiquinone oxidoreductase-relatedC.G.S.X.
0.026e-134Zm.567.1.A1_atAF201459.1profilin 5-8e-60At2g44100ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)C.G.S.X.
0.016e-134Zm.5401.2.A1_atAY104186.1hypothetical protein LOC100274064-9e-121At1g53750RPT1A (REGULATORY PARTICLE TRIPLE-A 1A)C.G.S.X.
0.036e-134Zm.4654.2.A1_a_atAI737829hypothetical protein LOC100272406-3e+0At1g21500unknown proteinC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.026e+032Arabidopsis thalianaAt5g66710836804protein kinase, putativeF:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA---C.G.S.X.
0.051e-448Glycine maxGma.16334.1.S1_x_atCD407877--3e-2At2g30570PSBW (PHOTOSYSTEM II REACTION CENTER W)C.G.S.X.
0.254e-61234Hordeum vulgareContig3517_atContig3517--5e+0At2g18210unknown proteinC.G.S.X.
0.133e-49196Oryza sativaOs01g0773700AK119225.1-Photosystem II reaction center W protein (PSII 6.1kDa protein) (Fragment)9e-13At5g66005Expressed proteinC.G.S.X.
0.115e-136Populus trichocarpaPtpAffx.454.34.A1_atCV266012hypothetical protein-2e-8At2g30570PSBW (PHOTOSYSTEM II REACTION CENTER W)C.G.S.X.
0.203e-63242Triticum aestivumTa.891.1.S1_x_atBG908822--6e+0At2g18210unknown proteinC.G.S.X.
0.034e-134Vitis vinifera1615570_atCF212733hypothetical protein LOC100258949-2e+0At5g10040unknown proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage