Gene omics information

Query gene ID	Zm.5834.1.A1_a_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.5834.1.A1_a_at	BM335098	-	-	6e+0	At4g01260	transcription regulator	S.X.	H.G.	Please select
0.67	85.8	Zm.13427.1.S1_at	AF124738.1	hypothetical protein LOC100194389	-	1e-7	At4g21520	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.50	65.7	Zm.5922.1.A1_at	CN844887	DNA-binding protein S1FA2	-	2e+0	At1g16250	kelch repeat-containing F-box family protein	S.X.	H.G.	Please select
0.50	65.7	Zm.18992.1.A1_at	CO521210	-	-	4e-1	At5g20370	serine-rich protein-related	S.X.	H.G.	Please select
0.46	58.4	Zm.19306.1.A1_at	AI664819	hypothetical protein LOC100193355	-	6e-1	At4g13720	inosine triphosphate pyrophosphatase, putative / HAM1 family protein	S.X.	H.G.	Please select
0.31	31.6	Zm.8336.1.S1_x_at	AB061270.1	NAS1 protein	-	4e+0	At2g44360	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.8	98.5	GSM320441	protocol: mRNA - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320444	protocol: mRNA - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320443	protocol: mRNA - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320439	protocol: mRNA - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320438	protocol: mRNA - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320442	protocol: mRNA - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM253264	ZM_4d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
6.0	97.3	GSM253276	ZM_8d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
6.0	97.3	GSM320446	protocol: mRNA - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-1	36	Zm.3518.1.A1_at	BM337627	-	-	1e+0	At2g22000	PROPEP6 (Elicitor peptide 6 precursor)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.9937.1.A1_at	CK786743	-	-	2e-1	At1g03610	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.18940.1.A1_at	CO533141	-	-	3e-3	At1g45110	tetrapyrrole methylase family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.18112.1.A1_at	CF627231	mazG nucleotide pyrophosphohydrolase domain protein	-	3e-1	At4g36890	IRX14 (irregular xylem 14)	C.G.	S.X.	Please select
0.03	9e+0	30	ZmAffx.674.1.A1_at	AI734487	-	-	5e-1	At2g33470	GLTP1 (glycolipid transfer protein 1)	C.G.	S.X.	Please select
0.03	9e+0	30	ZmAffx.674.1.S1_at	AI734487	-	-	5e-1	At2g33470	GLTP1 (glycolipid transfer protein 1)	C.G.	S.X.	Please select
0.01	9e+0	30	Zm.9519.1.A1_at	AY107523.1	hypothetical protein LOC100193889	-	9e-7	At2g25670	unknown protein	C.G.	S.X.	Please select
0.01	9e+0	30	Zm.9519.1.A1_a_at	AY107523.1	hypothetical protein LOC100193889	-	9e-7	At2g25670	unknown protein	C.G.	S.X.	Please select
0.02	9e+0	30	Zm.8314.1.A1_at	BM953578	hypothetical protein LOC100277461	-	6e+0	At2g38640	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e+0	32	Arabidopsis thaliana	At4g01260	828088	transcription regulator	F:transcription regulator activity;P:biological_process unknown;C:unknown;OMPFB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	2e-6	54	Glycine max	GmaAffx.20667.1.S1_at	BF009272	-	-	3e+0	At4g18810	binding / catalytic/ transcription repressor	C.G.	S.X.	Please select
0.16	3e-52	204	Hordeum vulgare	Contig4818_at	Contig4818	-	-	2e-14	At4g18810	binding / catalytic/ transcription repressor	C.G.	S.X.	Please select
0.15	1e-51	204	Oryza sativa	Os02g0234500	AK071487.1	-	UOS1	4e-19	At4g18810	binding / catalytic/ transcription repressor	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	1e-4	48	Populus trichocarpa	PtpAffx.147859.1.A1_at	CV263889	hypothetical protein	-	7e-31	At4g18810	binding / catalytic/ transcription repressor	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	4e-1	36	Triticum aestivum	TaAffx.108790.1.S1_at	CA684098	-	-	1e+0	At1g26940	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1609510_at	CF513342	-	-	4e+0	At3g14110	FLU (FLUORESCENT IN BLUE LIGHT)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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