Gene omics information

Query gene ID	Zm.5833.1.A1_at
Gene name	adenylate kinase
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.5833.1.A1_at	CA398697	adenylate kinase	-	1e-2	At5g47840	AMK2 (Adenosine monophosphate kinase)	S.X.	H.G.	Please select
0.67	85.8	Zm.606.1.A2_s_at	AF326493.1	plasma membrane integral protein ZmPIP2-2 /// plasma membrane intrinsic protein2	-	1e-37	At2g37180	RD28 (RESPONSIVE TO DESICCATION 28)	S.X.	H.G.	Please select
0.59	76.1	Zm.6061.1.S1_at	AY109202.1	hypothetical protein LOC100192928	-	2e-46	At5g20570	RBX1 (RING-BOX 1)	S.X.	H.G.	Please select
0.42	51.3	Zm.5823.1.A1_at	CO520297	hypothetical protein LOC100194104	-	2e-10	At1g14310	haloacid dehalogenase-like hydrolase family protein	S.X.	H.G.	Please select
0.42	51.3	Zm.5824.1.A1_at	AI649789	-	-	2e+0	At5g10680	calmodulin-binding protein-related	S.X.	H.G.	Please select
0.40	48.5	Zm.4061.1.S1_at	AI834355	-	-	3e+0	At3g25030	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.5	97.1	GSM253257	ZM_2d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
5.5	97.1	GSM253258	ZM_2d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
4.9	96.7	GSM253269	ZM_4.5d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
4.9	96.7	GSM253256	ZM_2d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
4.9	96.7	GSM253270	ZM_4.5d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
4.6	96.4	GSM320441	protocol: mRNA - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM253263	ZM_4d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
4.4	96.2	GSM253268	ZM_4.5d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
4.2	96.0	GSM253262	ZM_4d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
4.1	95.9	GSM320444	protocol: mRNA - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e-13	75	Zm.5152.1.A1_at	AY105529.1	hypothetical protein LOC100275689	-	2e+0	At3g53460	CP29	C.G.	S.X.	Please select
0.04	4e-13	75	Zm.5152.1.S1_at	AY105529.1	-	-	2e+0	At3g53460	CP29	C.G.	S.X.	Please select
0.03	1e-3	44	ZmAffx.828.1.S1_at	AI770529	-	-	3e+0	At2g32890	RALFL17 (RALF-LIKE 17)	C.G.	S.X.	Please select
0.02	5e-3	42	Zm.9915.1.A1_x_at	BM269526	-	-	3e-1	At4g33660	unknown protein	C.G.	S.X.	Please select
0.02	5e-3	42	Zm.9625.1.A1_x_at	BM340508	Hypothetical protein LOC100216879	-	3e-1	At4g33660	unknown protein	C.G.	S.X.	Please select
0.02	5e-3	42	Zm.9631.1.A1_at	BM336220	Hypothetical protein LOC100216879	-	3e-1	At5g52360	ADF10 (ACTIN DEPOLYMERIZING FACTOR 10)	C.G.	S.X.	Please select
0.03	5e-3	42	Zm.12118.1.A1_at	BQ034341	hypothetical protein LOC100277272	-	3e-1	At2g46330	AGP16 (ARABINOGALACTAN PROTEIN 16)	C.G.	S.X.	Please select
0.01	8e-2	38	Zm.9327.1.A1_at	BM349135	-	-	2e-10	At3g16630	KINESIN-13A	C.G.	S.X.	Please select
0.01	8e-2	38	Zm.2311.1.A1_at	AY187718.1	SET domain protein SDG111	-	3e-4	At1g73100	SUVH3 (SU(VAR)3-9 HOMOLOG 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	1e-2	42	Arabidopsis thaliana	At5g47840	834835	AMK2 (Adenosine monophosphate kinase)	F:nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, ATP binding, adenylate kinase activity, phosphotransferase activity, phosphate group as acceptor;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process;C:chloroplast, chloroplast stroma;BOMFPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	7e-14	79	Glycine max	GmaAffx.71174.1.S1_at	AW423975	-	-	3e-21	At5g47840	AMK2 (Adenosine monophosphate kinase)	C.G.	S.X.	Please select
0.41	7e-129	460	Hordeum vulgare	Contig9902_at	Contig9902	-	-	2e+0	At5g35170	adenylate kinase family protein	C.G.	S.X.	Please select
0.35	1e-136	488	Oryza sativa	Os08g0109300	AK066688.1	-	Adenylate kinase, chloroplast (EC 2.7.4.3)(ATP-AMP transphosphorylase)	8e-10	At5g47840	AMK2 (Adenosine monophosphate kinase)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	3e-13	77	Populus trichocarpa	Ptp.3804.1.S1_at	CV261647	hypothetical protein	-	4e-61	At5g47840	AMK2 (Adenosine monophosphate kinase)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.39	2e-124	446	Triticum aestivum	TaAffx.57748.1.S1_at	CA625381	-	-	4e-3	At5g47840	AMK2 (Adenosine monophosphate kinase)	C.G.	S.X.	Please select
0.08	2e-20	99	Vitis vinifera	1610128_at	CF212466	-	-	6e-23	At5g47840	AMK2 (Adenosine monophosphate kinase)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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