Gene omics information

Query gene ID	Zm.583.1.S1_at
Gene name	tangled1
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	76.1	Zm.583.1.S1_at	AF305892.1	tangled1	-	3e-1	At1g21350	antioxidant/ oxidoreductase	S.X.	H.G.	Please select
0.42	51.3	ZmAffx.1083.1.A1_at	AI974922	-	-	1e+0	At1g59830	PP2A-1	S.X.	H.G.	Please select
0.40	48.5	Zm.16049.1.S1_at	BM888637	40S ribosomal protein S28	-	8e-5	At5g03850	40S ribosomal protein S28 (RPS28B)	S.X.	H.G.	Please select
0.31	31.6	Zm.9762.1.A1_at	CF629937	hypothetical protein LOC100277958	-	3e-11	At3g45610	Dof-type zinc finger domain-containing protein	S.X.	H.G.	Please select
0.22	16.9	Zm.6195.1.A1_x_at	AI668513	hypothetical protein LOC100275106	-	4e+0	At4g17790	-	S.X.	H.G.	Please select
0.11	5.3	Zm.17513.1.A1_at	BM074532	MFP1 attachment factor 1	-	5e+0	At1g22840	CYTC-1 (CYTOCHROME C-1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
41.2	99.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
34.0	99.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
31.1	99.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.3	99.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.7	99.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.3	99.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.7	99.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6	98.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-10	65	Zm.8052.1.S1_at	CK827803	-	-	2e-2	At5g58490	cinnamoyl-CoA reductase family	C.G.	S.X.	Please select
0.02	1e-7	57	Zm.5862.1.A1_at	BM333410	50S ribosomal protein L18	-	5e-4	At1g48350	ribosomal protein L18 family protein	C.G.	S.X.	Please select
0.03	7e-6	52	Zm.13082.1.S1_at	CD438478	-	-	1e-1	At3g49800	BSD domain-containing protein	C.G.	S.X.	Please select
0.03	7e-6	52	Zm.13082.1.S1_a_at	CD438478	-	-	1e-1	At3g49800	BSD domain-containing protein	C.G.	S.X.	Please select
0.02	1e-1	38	Zm.8222.1.A1_at	CK826764	-	-	2e+0	At4g34610	BLH6 (BELL1-LIKE HOMEODOMAIN 6)	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.6223.1.A1_at	AY108739.1	pseudouridylate synthase/ transporter	-	7e-11	At5g14460	pseudouridine synthase/ transporter	C.G.	S.X.	Please select
0.06	1e-1	38	Zm.2417.1.A1_at	BM338817	LSM7-like	-	2e+0	At5g23290	PDF5 (PREFOLDIN 5)	C.G.	S.X.	Please select
0.02	1e-1	38	Zm.15811.1.S1_at	CF633035	RNA binding protein	-	7e+0	At3g52550	-	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.6613.1.A1_at	AI467737	hypothetical protein LOC100274013	-	1e+0	At4g25515	SLK3 (SEUSS-LIKE 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	3e-1	38	Arabidopsis thaliana	At1g21350	838734	antioxidant/ oxidoreductase	F:oxidoreductase activity, antioxidant activity;P:unknown;C:chloroplast;OBPAM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	1e+0	36	Glycine max	PsAffx.C92000026_at	PsAffx.C92000026	-	-	2e+0	At4g15270	glucosyltransferase-related	C.G.	S.X.	Please select
0.02	1e-1	38	Hordeum vulgare	HM10P17r_at	HM10P17r	-	-	3e-1	At4g31750	WIN2 (HOPW1-1-INTERACTING 2)	C.G.	S.X.	Please select
0.40	3e-61	238	Oryza sativa	Os02g0459300	9630.m02458	-	Microtubule-binding protein TANGLED1	6e-1	At4g17500	ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	6e+0	34	Populus trichocarpa	PtpAffx.218077.1.S1_at	pmrna33598	hypothetical protein	-	6e+0	At4g26030	transcription factor	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	3e-1	38	Triticum aestivum	Ta.20872.1.S1_x_at	CA618766	-	-	2e+1	At5g55570	unknown protein	C.G.	S.X.	Please select
0.01	5e+0	32	Vitis vinifera	1613931_at	CA814685	hypothetical protein LOC100257117	-	7e-5	At2g46540	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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