CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.5825.1.A1_at

Gene name hypothetical protein LOC100279429

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.62 79.8 Zm.5825.1.A1_at AI649790 hypothetical protein LOC100279429 - 1e-2 At1g10390 nucleoporin family protein S.X. H.G.
0.59 76.1 ZmAffx.485.1.A1_at AI691349 - - 8e-1 Atmg00140 - S.X. H.G.
0.58 75.1 ZmAffx.597.1.A1_at AI715025 - - 8e-1 At1g43260 - S.X. H.G.
0.58 75.1 Zm.13841.1.S1_at AY104076.1 - - 2e-42 At3g62270 anion exchange family protein S.X. H.G.
0.40 48.5 Zm.5969.2.A1_a_at AI629909 hypothetical protein LOC100272999 /// hypothetical protein LOC100273990 - 2e+0 At5g59030 COPT1 (copper transporter 1) S.X. H.G.
0.36 41.3 ZmAffx.219.1.A1_at AI670227 - - 3e+0 At3g30430 F-box family protein S.X. H.G.
0.36 41.3 Zm.14014.1.A1_at CF050089 NADH-ubiquinone oxidoreductase 23 kDa subunit - 2e-62 At1g79010 NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial (TYKY) S.X. H.G.
0.30 29.8 ZmAffx.1076.1.A1_at AI948113 hypothetical protein LOC100279228 - 3e+0 At4g36900 RAP2.10 (related to AP2 10) S.X. H.G.
0.30 29.8 Zm.1436.1.S1_at CB617096 beta-hexosaminidase beta chain - 5e-2 At3g55260 HEXO1 (BETA-HEXOSAMINIDASE 1) S.X. H.G.
0.30 29.8 Zm.14471.1.A1_a_at CF017210 60S ribosomal protein L7-1 - 8e-31 At2g44120 60S ribosomal protein L7 (RPL7C) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.3 98.0 GSM206300 Upper pulvinus 2 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
7.8 97.9 GSM206307 Lower pulvinus 5 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
6.1 97.4 GSM206287 Left pulvinus control total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
5.3 96.9 GSM206305 Right pulvinus control polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
5.2 96.9 GSM206294 Lower pulvinus 2 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
5.2 96.9 GSM206301 Upper pulvinus 5 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
5.0 96.7 GSM206299 Left pulvinus control polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.9 96.7 GSM206288 Upper pulvinus 2 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.8 96.6 GSM206308 Lower pulvinus 15 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.5 96.3 GSM206302 Upper pulvinus 15 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.46 0 724 Zm.12988.1.A1_at CA402887 - - 4e-1 At4g25810 XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6) C.G. S.X.
0.01 2e-3 44 Zm.3184.1.A1_at AY105651.1 gibberellin 20-oxidase - 5e-2 At5g07200 YAP169 C.G. S.X.
0.01 1e-1 38 Zm.12865.1.A1_at CD959843 hypothetical protein LOC100194037 - 2e+0 At4g25780 pathogenesis-related protein, putative C.G. S.X.
0.01 4e-1 36 Zm.6235.1.A1_at AW067088 hypothetical protein LOC100191165 - 2e-41 At1g79500 2-dehydro-3-deoxyphosphooctonate aldolase / phospho-2-dehydro-3-deoxyoctonate aldolase / 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase (KDSA) C.G. S.X.
0.01 2e+0 34 ZmAffx.66.1.A1_at AI665126 hypothetical protein LOC100279525 - 3e+0 At3g05460 sporozoite surface protein-related C.G. S.X.
0.01 2e+0 34 ZmAffx.66.1.S1_at AI665126 - - 3e+0 At3g05460 sporozoite surface protein-related C.G. S.X.
0.01 2e+0 34 Zm.8307.1.S1_x_at BQ619321 - - 8e+0 At3g20557 unknown protein C.G. S.X.
0.01 2e+0 34 Zm.7436.1.A1_at CF636669 - - 1e-1 At1g43160 RAP2.6 (related to AP2 6) C.G. S.X.
0.01 2e+0 34 Zm.5357.1.S1_at AI619398 hypothetical protein LOC100273070 - 8e-4 At1g03110 transducin family protein / WD-40 repeat family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e-2 42 Arabidopsis thaliana At1g10390 837579 nucleoporin family protein F:transporter activity;P:transport;C:chloroplast, nuclear pore;MBOFPVA - - - C.G. S.X.
0.08 2e-2 42 Glycine max GmaAffx.20534.1.S1_at BU545862 - - 6e+0 At3g51020 unknown protein C.G. S.X.
0.29 2e-95 349 Hordeum vulgare Contig5595_at Contig5595 - - 4e-10 At1g10390 nucleoporin family protein C.G. S.X.
0.29 9e-52 206 Oryza sativa Os.10039.1.S1_at - - - 0 C.G. S.X.
0.08 5e-3 44 Populus trichocarpa PtpAffx.201421.1.S1_at pmrna2806 hypothetical protein - 2e-21 At1g59660 nucleoporin family protein C.G. S.X.
0.40 1e-80 301 Triticum aestivum Ta.12153.1.S1_at BQ171697 - - 4e-5 At1g10390 nucleoporin family protein C.G. S.X.
0.01 2e-2 40 Vitis vinifera 1621184_at CD009048 - - 3e+1 At3g02555 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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