Gene omics information

Query gene ID	Zm.5824.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	81.1	Zm.5824.1.A1_at	AI649789	-	-	2e+0	At5g10680	calmodulin-binding protein-related	S.X.	H.G.	Please select
0.91	99.0	Zm.3926.1.A1_at	BU050394	hypothetical protein LOC100278398	-	2e+0	At5g66400	RAB18 (RESPONSIVE TO ABA 18)	S.X.	H.G.	Please select
0.80	94.0	RPTR-Zm-AF292559-1_at	RPTR-Zm-AF292559-1	-	-	0			S.X.	H.G.	Please select
0.73	89.9	Zm.709.1.A1_at	AY108614.1	ATP synthase B chain	-	3e-8	At4g32260	ATP synthase family	S.X.	H.G.	Please select
0.71	88.2	Zm.1700.1.S1_at	CA403663	-	-	2e-3	At2g35760	integral membrane family protein	S.X.	H.G.	Please select
0.46	58.4	Zm.16530.1.A1_at	BM953023	-	-	3e-51	At3g52590	UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.0	98.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM253262	ZM_4d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.36	2e-100	365	ZmAffx.1186.1.A1_at	AY110093.1	-	-	2e+0	At5g61200	-	C.G.	S.X.	Please select
0.26	2e-100	365	ZmAffx.1186.1.S1_at	AY110093.1	-	-	2e+0	At5g61200	-	C.G.	S.X.	Please select
0.02	4e+0	32	Zm.8357.1.A1_at	BM267266	-	-	1e-4	At3g62020	GLP10 (GERMIN-LIKE PROTEIN 10)	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.7134.1.S1_at	CF634276	hypothetical protein LOC100272801 /// trans-cinnamate 4-monooxygenase	-	1e-18	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	C.G.	S.X.	Please select
0.02	4e+0	32	Zm.19017.1.A1_at	CO524887	CHY1	-	2e-3	At5g65940	CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)	C.G.	S.X.	Please select
0.02	4e+0	32	Zm.16213.1.S1_at	CF016952	hypothetical protein LOC100216627	-	7e+0	At3g29270	ubiquitin-protein ligase	C.G.	S.X.	Please select
0.01	1e+1	30	Zm.9788.1.A1_at	BM338945	-	-	1e-1	At1g17545	protein phosphatase 2C-related / PP2C-related	C.G.	S.X.	Please select
0.01	1e+1	30	Zm.9486.1.A1_at	CK347877	CHY1	-	1e-18	At2g30660	3-hydroxyisobutyryl-coenzyme A hydrolase, putative / CoA-thioester hydrolase, putative	C.G.	S.X.	Please select
0.02	1e+1	30	Zm.9404.1.A1_at	BM348989	immature colon carcinoma transcript 1 protein	-	2e-9	At1g62850	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At5g10680	830932	calmodulin-binding protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFVPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e+0	34	Glycine max	GmaAffx.66304.1.S1_at	AW164351	-	-	1e+0	At3g09710	IQD1 (IQ-DOMAIN 1)	C.G.	S.X.	Please select
0.26	2e-35	149	Hordeum vulgare	Contig9242_at	Contig9242	-	-	4e-18	At3g06430	EMB2750 (embryo defective 2750)	C.G.	S.X.	Please select
0.20	9e-23	109	Oryza sativa	Os03g0309800	AK106141.1	-	PPR2	4e-15	At3g06430	EMB2750 (embryo defective 2750)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e-1	38	Populus trichocarpa	PtpAffx.10330.6.S1_at	CV245094	-	-	9e-1	At4g13095	LCR37 (Low-molecular-weight cysteine-rich 37)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.15	2e-19	97	Triticum aestivum	TaAffx.80060.1.S1_at	CA631425	-	-	5e+0	At3g03210	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Vitis vinifera	1611426_at	CF405451	-	-	4e+0	At3g45320	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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