Gene omics information

Query gene ID	Zm.582.1.S1_at
Gene name	yellow stripe1
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.582.1.S1_at	AF186234.2	yellow stripe1	-	3e-1	At5g24380	YSL2 (YELLOW STRIPE LIKE 2)	S.X.	H.G.	Please select
0.73	89.9	Zm.886.5.A1_at	BU499802	-	-	1e+0	At1g31750	proline-rich family protein	S.X.	H.G.	Please select
0.67	85.8	Zm.7609.1.A1_at	BM079175	-	-	3e-1	At5g17523	-	S.X.	H.G.	Please select
0.61	79.5	Zm.9181.1.A1_at	CA402930	hypothetical protein LOC100192510	-	5e-2	At2g28710	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please select
0.50	65.7	Zm.15916.1.A1_at	AY107625.1	-	-	1e+0	At1g62480	vacuolar calcium-binding protein-related	S.X.	H.G.	Please select
0.40	48.5	Zm.16959.3.S1_a_at	CA400373	hypothetical protein LOC100192872 /// elongation factor 1-gamma 3	-	2e-57	At1g57720	elongation factor 1B-gamma, putative / eEF-1B gamma, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
36.5	99.9	GSM253256	ZM_2d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
23.8	99.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.9	99.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.9	99.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.9	99.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.9	99.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.7	99.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.5	99.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.3	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.0	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	2e-46	186	Zm.19083.1.A1_at	AW330890	hypothetical protein LOC100273385	-	2e+0	At2g37680	-	C.G.	S.X.	Please select
0.08	6e-7	56	Zm.13487.1.A1_at	AY108830.1	transposon protein	-	2e-2	At5g41000	YSL4 (YELLOW STRIPE LIKE 4)	C.G.	S.X.	Please select
0.05	6e-4	46	Zm.10827.1.S1_at	BQ619419	-	-	8e-2	At1g65730	YSL7 (YELLOW STRIPE LIKE 7)	C.G.	S.X.	Please select
0.01	9e-3	42	Zm.18014.1.A1_s_at	CK826981	expansin-like 3	-	6e-1	At3g61260	DNA-binding family protein / remorin family protein	C.G.	S.X.	Please select
0.01	3e-2	40	Zm.2859.1.A1_a_at	BM351067	alcohol dehydrogenase2	-	2e-11	At1g77120	ADH1 (ALCOHOL DEHYDROGENASE 1)	C.G.	S.X.	Please select
0.01	5e-1	36	Zm.5748.1.A1_at	AI649420	hypothetical protein LOC100278320	-	8e-8	At5g16960	NADP-dependent oxidoreductase, putative	C.G.	S.X.	Please select
0.01	5e-1	36	Zm.5544.1.A1_at	AI746165	nucleic acid binding protein	-	4e-43	At2g20280	zinc finger (CCCH-type) family protein	C.G.	S.X.	Please select
0.01	5e-1	36	Zm.12250.1.S1_at	BQ294093	-	-	4e+0	At3g01250	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.990.1.A1_at	CF636054	-	-	1e+1	At5g44345	F-box family protein-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	3e-1	38	Arabidopsis thaliana	At5g24380	832509	YSL2 (YELLOW STRIPE LIKE 2)	closest Arabidopsis homolog of Zea maize metal-phytosiderophore/metal-nicotianamine transporter ZmYS1	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	4e-1	38	Glycine max	PsAffx.psMA013xI18f_at	PsAffx.psMA013xI18f	-	-	4e-3	At4g26470	calcium ion binding	C.G.	S.X.	Please select
0.22	3e-58	226	Hordeum vulgare	Contig22627_at	Contig22627	-	-	2e-15	At5g53550	YSL3 (YELLOW STRIPE LIKE 3)	C.G.	S.X.	Please select
0.49	3e-98	361	Oryza sativa	Os04g0542800	AK070304.1	-	Oligopeptide transporter OPT superfamily protein	6e-9	At5g24380	YSL2 (YELLOW STRIPE LIKE 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.01	1e-1	40	Populus trichocarpa	PtpAffx.52678.1.A1_at	CV237943	hypothetical protein	-	1e+0	At5g52750	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.10	2e-18	95	Triticum aestivum	TaAffx.113315.1.S1_at	CA615901	-	-	4e+0	At3g24315	AtSec20	C.G.	S.X.	Please select
0.02	4e-1	36	Vitis vinifera	1617609_at	CF207468	hypothetical protein LOC100255514	-	3e-24	At5g24380	YSL2 (YELLOW STRIPE LIKE 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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