CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.5819.1.S1_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.48 61.3 Zm.5819.1.S1_at AI649779 - - 6e-4 At1g29900 CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) S.X. H.G.
0.67 85.8 Zm.3573.1.A1_at CF629925 peroxidase 54 - 3e-3 At5g06720 peroxidase, putative S.X. H.G.
0.63 81.1 Zm.6905.1.A1_a_at AF461814.1 histone1a - 6e-1 At4g04620 ATG8B (autophagy 8b) S.X. H.G.
0.46 58.4 Zm.6217.1.A1_at BE129797 plant-specific domain TIGR01589 family protein - 7e-1 At1g28600 lipase, putative S.X. H.G.
0.38 44.2 Zm.6218.1.A1_at AI677344 developmentally-regulated GTP-binding protein 1 - 4e-58 At4g39520 GTP-binding protein, putative S.X. H.G.
0.28 28.1 RPTR-Zm-M57289-1_s_at RPTR-Zm-M57289-1 - - 0 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.6 96.4 GSM320443 protocol: mRNA - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1 95.9 GSM205371 Mo17xB73 13 DAP endosperm tissue biological replicate 2 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
4.0 95.8 GSM320442 protocol: mRNA - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3 94.7 GSM253280 ZM_8d_SG200_3Alu_I GSE10023 Maize gene expression during infection with Ustilago maydis
3.0 94.0 GSM205369 Mo17 13 DAP endosperm tissue biological replicate 2 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.0 94.0 GSM205365 Mo17 13 DAP endosperm tissue biological replicate 1 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.9 93.8 GSM205370 B73 13 DAP endosperm tissue biological replicate 2 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.9 93.8 GSM253244 ZM_12h_Mock_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
2.9 93.8 GSM320441 protocol: mRNA - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9 93.8 GSM253282 ZM_8d_SG200_3Alu_III GSE10023 Maize gene expression during infection with Ustilago maydis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e+0 34 Zm.4142.1.A1_at AI855154 - - 3e+0 At5g46780 VQ motif-containing protein C.G. S.X.
0.02 1e+0 34 Zm.18092.1.A1_at CK985589 - - 6e+0 At4g17310 unknown protein C.G. S.X.
0.01 1e+0 34 Zm.174.1.A1_at AF073330.1 replication origin activator 2 - 1e-83 At5g46280 DNA replication licensing factor, putative C.G. S.X.
0.01 4e+0 32 Zm.9903.1.A1_at BM335103 hypothetical protein LOC100273348 - 3e+0 At1g63220 C2 domain-containing protein C.G. S.X.
0.02 4e+0 32 Zm.8559.1.A1_at BM267276 - - 6e+0 At3g54110 PUMP1 (PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1) C.G. S.X.
0.01 4e+0 32 Zm.14530.1.A1_at AY179882.1 zea floricaula/leafy1 - 8e-13 At5g61850 LFY (LEAFY) C.G. S.X.
0.01 4e+0 32 Zm.10789.1.S1_at AI665421 zinc finger, C3HC4 type family protein - 1e-8 At1g11020 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 2e+1 30 Zm.8930.1.A2_at CF634895 - - 3e-7 At3g56460 oxidoreductase, zinc-binding dehydrogenase family protein C.G. S.X.
0.01 2e+1 30 Zm.8930.1.A1_at BM074751 oxidoreductase/ zinc ion binding protein - 3e-7 At3g56460 oxidoreductase, zinc-binding dehydrogenase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 6e-4 46 Arabidopsis thaliana At1g29900 839868 CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) carbamoyl phosphate synthetase large chain (CARB) mRNA, - - - C.G. S.X.
0.11 6e-14 79 Glycine max Gma.3641.2.S1_at BI316996 - - 8e-6 At1g29900 CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) C.G. S.X.
0.34 7e-178 623 Hordeum vulgare Contig7213_at Contig7213 - - 8e-27 At1g29900 CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) C.G. S.X.
0.52 4e-170 599 Oryza sativa Os.48825.1.S1_at - - - 0 C.G. S.X.
0.06 2e-7 57 Populus trichocarpa PtpAffx.3808.1.A1_at CV240215 hypothetical protein - 2e-13 At1g29900 CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) C.G. S.X.
0.44 2e-136 486 Triticum aestivum Ta.6652.1.S1_at CK160364 - - 3e-6 At1g29900 CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1617637_at CB974429 hypothetical protein LOC100245010 - 1e-3 At1g20220 nucleic acid binding C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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