Gene omics information

Query gene ID	Zm.5813.1.A1_at
Gene name	hypothetical protein LOC100191474
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	88.2	Zm.5813.1.A1_at	CF056763	hypothetical protein LOC100191474	-	8e-32	At5g55310	TOP1BETA (DNA TOPOISOMERASE 1 BETA)	S.X.	H.G.	Please select
0.83	95.6	ZmAffx.89.1.A1_at	AI665353	hypothetical protein LOC100277768	-	1e+1	At5g20560	beta-1,3-glucanase, putative	S.X.	H.G.	Please select
0.77	92.1	Zm.18157.1.A1_at	CO533028	-	-	2e-1	At4g20290	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.4171.1.A1_at	BG841769	isoamyl acetate-hydrolyzing esterase	-	3e+0	At1g69190	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase/ dihydropteroate synthase	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.105.1.S1_at	AI665537	-	-	3e+0	At4g20000	VQ motif-containing protein	S.X.	H.G.	Please select
0.61	79.5	ZmAffx.901.1.A1_at	AI770894	-	-	1e+1	At5g47455	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.3	98.9	GSM205425	B73 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
14.3	98.9	GSM205436	B73xMo17 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
14.1	98.8	GSM205433	B73 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
12.9	98.7	GSM205421	B73 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
11.8	98.6	GSM162264	Mutant 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
11.4	98.5	GSM205423	B73xMo17 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
10.5	98.4	GSM205422	Mo17xB73 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
10.4	98.4	GSM205431	Mo17 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
10.2	98.4	GSM205429	B73xMo17 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
10.2	98.4	GSM205434	Mo17xB73 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	6e-3	42	Zm.97.1.S1_at	BM073786	Eukaryotic initiation factor-5	-	1e-24	At1g36730	eukaryotic translation initiation factor 5, putative / eIF-5, putative	C.G.	S.X.	Please select
0.02	6e-3	42	Zm.9795.1.A1_at	BM339139	-	-	4e-1	At5g44480	DUR (DEFECTIVE UGE IN ROOT)	C.G.	S.X.	Please select
0.01	6e-3	42	Zm.9247.1.A1_at	BG842289	hypothetical protein LOC100280369	-	5e-20	At2g35630	MOR1 (MICROTUBULE ORGANIZATION 1)	C.G.	S.X.	Please select
0.02	6e-3	42	Zm.8854.1.A1_at	BM332798	-	-	4e-1	At5g05987	PRA1.A2 (PRENYLATED RAB ACCEPTOR 1.A2)	C.G.	S.X.	Please select
0.01	6e-3	42	Zm.8656.1.A1_at	BM336261	hypothetical protein LOC100192906	-	4e-2	At5g27440	unknown protein	C.G.	S.X.	Please select
0.01	6e-3	42	Zm.7177.2.A1_a_at	CF637816	aldolase1 /// hypothetical protein LOC100272913 /// fructose-bisphosphate aldolase cytoplasmic isozyme	-	4e-18	At3g52930	fructose-bisphosphate aldolase, putative	C.G.	S.X.	Please select
0.01	6e-3	42	Zm.7177.2.A1_x_at	CF637816	hypothetical protein LOC100272913	-	4e-18	At3g52930	fructose-bisphosphate aldolase, putative	C.G.	S.X.	Please select
0.01	6e-3	42	Zm.7054.1.S1_at	BM331766	actin-depolymerizing factor 6	-	6e-4	At5g59890	ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)	C.G.	S.X.	Please select
0.01	6e-3	42	Zm.6933.1.A1_at	BI679493	hypothetical protein LOC100274350	-	3e+0	At1g33280	ANAC015 (Arabidopsis NAC domain containing protein 15)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	8e-32	139	Arabidopsis thaliana	At5g55310	835624	TOP1BETA (DNA TOPOISOMERASE 1 BETA)	Encodes one of two Arabidopsis type-I DNA topoisomerase I genes. Reducing the level of expression of this gene in a top1alpha (At5g55300) mutant background causes seedling lethality.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.18	4e-19	97	Glycine max	Gma.6815.1.S1_at	BQ610426	-	-	4e-55	At5g55310	TOP1BETA (DNA TOPOISOMERASE 1 BETA)	C.G.	S.X.	Please select
0.34	2e-40	167	Hordeum vulgare	Contig9350_s_at	Contig9350	-	-	3e-8	At4g26701	DNA binding / DNA topoisomerase type I	C.G.	S.X.	Please select
0.47	0	856	Oryza sativa	Os08g0154600	AK070325.1	-	Topoisomerase I	1e-25	At5g55310	TOP1BETA (DNA TOPOISOMERASE 1 BETA)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.19	4e-19	97	Populus trichocarpa	PtpAffx.72988.1.S1_at	CK107497	hypothetical protein	-	7e-73	At5g55310	TOP1BETA (DNA TOPOISOMERASE 1 BETA)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.48	0	680	Triticum aestivum	Ta.30680.1.S1_a_at	BQ805327	-	-	3e-23	At5g55310	TOP1BETA (DNA TOPOISOMERASE 1 BETA)	C.G.	S.X.	Please select
0.17	5e-18	91	Vitis vinifera	1610256_at	CD711629	-	-	2e-15	At4g26701	DNA binding / DNA topoisomerase type I	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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