Gene omics information

Query gene ID	Zm.5796.2.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.39	45.6	Zm.5796.2.S1_at	AY107655.1	-	-	3e-18	At5g66420	-	S.X.	H.G.	Please select
0.67	85.8	Zm.9236.1.A1_at	BM339258	-	-	8e-2	At3g01860	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.1934.1.S1_s_at	AW519956	hypothetical protein LOC100216744 /// glycerophosphodiester phosphodiesterase	-	3e+0	At1g62770	invertase/pectin methylesterase inhibitor family protein	S.X.	H.G.	Please select
0.67	85.8	Zm.4406.1.A1_at	AI834053	splicing factor, arginine/serine-rich 12	-	2e+0	At2g26695	binding / zinc ion binding	S.X.	H.G.	Please select
0.57	75.1	Zm.5362.1.A1_at	AW498436	hypothetical protein LOC100193109	-	1e-1	At1g79860	ROPGEF12 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 12)	S.X.	H.G.	Please select
0.36	41.3	Zm.19044.1.S1_at	CO528761	-	-	3e+0	At5g53592	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
47.1	100.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
34.2	99.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.6	99.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.3	99.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.2	99.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.4	99.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.6	99.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.3	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.3	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1969	Zm.5796.2.A1_at	AY107655.1	-	-	3e-18	At5g66420	-	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.18450.1.A1_at	CD996768	-	-	1e-1	At3g18620	zinc finger (DHHC type) family protein	C.G.	S.X.	Please select
0.02	8e-1	34	Zm.11787.1.A1_a_at	BM380772	-	-	6e+0	At5g17523	-	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.10045.1.A1_at	CF051701	-	-	1e-12	At2g38770	EMB2765 (EMBRYO DEFECTIVE 2765)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.9060.1.A1_at	CO523385	hypothetical protein LOC100274301	-	1e+0	At5g57370	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.8575.1.A1_at	BM268744	transcription regulator	-	2e-6	At5g17560	BolA-like family protein	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.7870.1.S1_at	BU582061	activator of 90 kDa heat shock protein ATPase	-	1e-5	At3g12050	Aha1 domain-containing protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.5835.1.S1_at	AI649823	hypothetical protein LOC100275314	-	6e-9	At2g05310	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.493.1.A1_at	BM333846	LIM transcription factor homolog	-	5e-23	At1g10200	WLIM1	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	3e-18	93	Arabidopsis thaliana	At5g66420	836774	-	F:unknown;P:unknown;C:cellular_component unknown;BOFPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e-1	38	Glycine max	HgAffx.19982.1.S1_at	CB378271	-	-	2e+0	At4g19740	catalytic/ cation binding / chitinase/ hydrolase, hydrolyzing O-glycosyl compounds	C.G.	S.X.	Please select
0.32	7e-51	200	Hordeum vulgare	Contig16557_at	Contig16557	-	-	8e+0	At3g45093	-	C.G.	S.X.	Please select
0.41	5e-160	565	Oryza sativa	Os06g0472400	AK063108.1	-	Protein of unknown function UPF0261 domaincontaining protein	6e-12	At5g66420	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.14	6e-20	99	Populus trichocarpa	PtpAffx.115474.1.S1_s_at	AJ777240	hypothetical protein	-	6e-43	At5g66420	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.40	5e-146	517	Triticum aestivum	Ta.13554.1.S1_at	CK193098	-	-	3e-23	At5g66420	-	C.G.	S.X.	Please select
0.06	4e-8	57	Vitis vinifera	1617975_at	CF212560	hypothetical protein LOC100259176	-	3e-16	At5g66420	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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