Gene omics information

Query gene ID	Zm.5789.10.A1_x_at
Gene name	hypothetical protein LOC100192516
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	94.0	Zm.5789.10.A1_x_at	AI737302	hypothetical protein LOC100192516	-	6e-14	At1g43170	ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1)	S.X.	H.G.	Please select
0.61	79.5	Zm.2617.1.A1_at	AI964629	-	-	9e+0	At4g34190	SEP1 (STRESS ENHANCED PROTEIN 1)	S.X.	H.G.	Please select
0.57	75.1	Zm.11806.1.S1_at	BM380898	thylakoid lumenal 16.5 kDa protein	-	6e+0	At5g42146	unknown protein	S.X.	H.G.	Please select
0.32	33.4	Zm.4710.1.A1_at	AI738125	hypothetical protein LOC100280041	-	3e+0	At4g34410	RRTF1 ({REDOX RESPONSIVE TRANSCRIPTION FACTOR 1)	S.X.	H.G.	Please select
0.29	28.1	Zm.13811.1.A1_at	AY104705.1	-	-	2e+0	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	S.X.	H.G.	Please select
0.22	16.9	Zm.3263.1.A1_at	BG842806	nudix hydrolase 13	-	2e+0	At3g52525	OFP6 (OVATE FAMILY PROTEIN 6)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.6	92.9	GSM205421	B73 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
2.4	92.2	GSM205423	B73xMo17 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
2.3	91.7	GSM205436	B73xMo17 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
2.3	91.7	GSM205422	Mo17xB73 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
2.3	91.7	GSM205372	B73xMo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.2	91.3	GSM205371	Mo17xB73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.2	91.3	GSM205368	B73xMo17 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.2	91.3	GSM205375	Mo17xB73 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.1	90.8	GSM205373	Mo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.1	90.8	GSM205374	B73 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.87	0	704	Zm.5789.13.A1_a_at	AI670670	hypothetical protein LOC100192516	-	8e-7	At1g43170	ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1)	C.G.	S.X.	Please select
0.87	0	704	Zm.5789.13.S1_a_at	AI670670	Hypothetical protein LOC100192516	-	8e-7	At1g43170	ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1)	C.G.	S.X.	Please select
0.64	1e-154	543	Zm.5789.6.A1_x_at	AI374534	hypothetical protein LOC100192516	-	5e-28	At1g43170	ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1)	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.5124.1.S1_at	CA405206	ubiquitin-protein ligase	-	2e+0	At2g39490	F-box family protein	C.G.	S.X.	Please select
0.05	3e-1	34	Zm.3516.1.A1_at	AW036944	hypothetical protein LOC100278237	-	4e+0	At4g06490	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.5721.1.A1_a_at	AY105083.1	Hypothetical protein LOC100191423	-	9e-2	At4g12460	ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B)	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.5721.1.S1_at	AI637090	hypothetical protein LOC100191423	-	9e-2	At4g12460	ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B)	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.5721.1.S1_a_at	AI637090	hypothetical protein LOC100191423	-	9e-2	At4g12460	ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B)	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.5424.1.A1_at	AY107275.1	-	-	1e+0	At5g35475	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	6e-14	77	Arabidopsis thaliana	At1g43170	840916	ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1)	Encodes a cytoplasmic ribosomal protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.18	1e-15	83	Glycine max	Gma.12170.1.A1_at	BE657308	-	-	2e-10	At1g43170	ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1)	C.G.	S.X.	Please select
0.27	8e-24	109	Hordeum vulgare	HVSMEa0019D22f_s_at	HVSMEa0019D22f	-	-	2e+0	At1g08640	unknown protein	C.G.	S.X.	Please select
0.19	3e-60	232	Oryza sativa	Os12g0167900	D12630.1	-	60S ribosomal protein L3	1e-116	At1g43170	ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.14	3e-13	75	Populus trichocarpa	Ptp.1544.2.S1_at	CK087724	hypothetical protein	-	2e-124	At1g43170	ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.86	2e-143	508	Triticum aestivum	Ta.17254.1.S1_at	CA619127	-	-	3e-19	At1g43170	ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1)	C.G.	S.X.	Please select
0.14	3e-19	93	Vitis vinifera	1616883_at	CB347750	hypothetical protein LOC100260533	-	2e-158	At1g43170	ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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