Gene omics information

Query gene ID	Zm.578.1.S1_at
Gene name	MADS box protein 3
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.94	99.5	Zm.578.1.S1_at	AF112150.1	MADS box protein 3	-	3e-3	At5g60910	AGL8 (agamous-like 8)	S.X.	H.G.	Please select
0.40	48.5	Zm.6665.1.S1_at	AY104195.1	hypothetical protein LOC100274698	-	3e-7	At5g49720	ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1)	S.X.	H.G.	Please select
0.33	36.0	Zm.3999.1.S1_at	CF024332	hypothetical protein LOC100276811	-	3e+0	At5g39860	PRE1 (PACLOBUTRAZOL RESISTANCE1)	S.X.	H.G.	Please select
0.23	18.6	Zm.2181.1.S1_at	BF727788	-	-	9e-1	At2g10602	unknown protein	S.X.	H.G.	Please select
0.17	10.6	Zm.6644.2.A1_at	AY109212.1	-	-	4e+0	At5g42050	-	S.X.	H.G.	Please select
0.13	6.8	Zm.13169.1.A1_at	CA405223	-	-	4e+0	At1g10657	unknown protein	S.X.	H.G.	Please select
0.07	2.9	Zm.17901.1.S1_at	CK786928	-	-	7e-23	At3g62700	ATMRP10	S.X.	H.G.	Please select
0.06	2.3	Zm.10482.1.S1_at	AW330949	hypothetical protein LOC100280002	-	9e-1	At1g04680	pectate lyase family protein	S.X.	H.G.	Please select
0.04	1.5	Zm.4420.1.S1_at	CF628272	hypothetical protein LOC100273293	-	4e-15	At3g13450	DIN4 (DARK INDUCIBLE 4)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
21.2	99.4	GSM202299	Mo17xB73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
18.6	99.2	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
17.0	99.1	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
16.7	99.1	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
15.6	99.0	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
15.4	99.0	GSM202290	Mo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
14.0	98.8	GSM202306	Mo17xB73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
13.2	98.8	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
12.9	98.7	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
11.9	98.6	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.63	0	932	Zm.1513.1.S1_at	L46400.1	MADS box protein	-	9e-13	At5g60910	AGL8 (agamous-like 8)	C.G.	S.X.	Please select
0.30	2e-122	438	Zm.1206.1.S1_at	AI834095	m4 protein	-	2e-4	At5g60910	AGL8 (agamous-like 8)	C.G.	S.X.	Please select
0.31	3e-118	424	Zm.14828.1.S1_at	AJ430632.1	m15 protein	-	8e-10	At5g60910	AGL8 (agamous-like 8)	C.G.	S.X.	Please select
0.11	2e-51	202	Zm.14366.1.S1_at	CD438154	m28 protein	-	2e-4	At5g60910	AGL8 (agamous-like 8)	C.G.	S.X.	Please select
0.10	3e-38	159	Zm.4424.1.A1_at	CO526301	m24 protein	-	5e-2	At2g22540	SVP (SHORT VEGETATIVE PHASE)	C.G.	S.X.	Please select
0.11	5e-34	145	Zm.6382.1.A1_at	AI691625	m31 protein	-	4e-2	At2g22540	SVP (SHORT VEGETATIVE PHASE)	C.G.	S.X.	Please select
0.08	2e-33	143	Zm.293.1.S1_at	L46398.1	MADS box protein	-	3e-3	At3g61120	AGL13 (AGAMOUS-LIKE 13)	C.G.	S.X.	Please select
0.07	7e-33	141	Zm.1703.1.S1_at	CO522762	M27 protein	-	6e-9	At2g45650	AGL6 (AGAMOUS-LIKE 6)	C.G.	S.X.	Please select
0.09	7e-33	141	Zm.1104.1.A1_at	BE056041	Zea mays MADS8	-	4e-2	At2g03710	SEP4 (SEPALLATA 4)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	3e-3	44	Arabidopsis thaliana	At5g60910	836212	AGL8 (agamous-like 8)	MADS box gene negatively regulated by APETALA1	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	4e-6	54	Glycine max	GmaAffx.57956.1.S1_at	BQ454007	-	-	1e-33	At5g60910	AGL8 (agamous-like 8)	C.G.	S.X.	Please select
0.40	0	698	Hordeum vulgare	Contig11229_at	Contig11229	-	-	2e-4	At5g60910	AGL8 (agamous-like 8)	C.G.	S.X.	Please select
0.40	2e-178	626	Oryza sativa	Os07g0108900	AF058698.1	-	MADS15 protein	8e-16	At5g60910	AGL8 (agamous-like 8)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e-9	63	Populus trichocarpa	PtpAffx.9092.1.S1_s_at	AF185574.2	hypothetical protein	-	2e-56	At3g02310	SEP2 (SEPALLATA 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.43	4e-123	442	Triticum aestivum	TaAffx.143995.17.S1_s_at	AY188331	MADS-box protein TaVRT-1	-	1e-3	At5g60910	AGL8 (agamous-like 8)	C.G.	S.X.	Please select
0.07	3e-3	42	Vitis vinifera	1609046_at	CB971729	hypothetical protein LOC100256085	-	1e-13	At2g45650	AGL6 (AGAMOUS-LIKE 6)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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