Gene omics information

Query gene ID	Zm.5767.1.A1_at
Gene name	hypothetical protein LOC100273619
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	88.2	Zm.5767.1.A1_at	AI714844	hypothetical protein LOC100273619	-	8e-2	At3g53850	-	S.X.	H.G.	Please select
0.73	89.9	Zm.854.1.A1_at	AW066950	vesicle-associated membrane protein-associated protein A	-	1e-2	At4g00170	vesicle-associated membrane family protein / VAMP family protein	S.X.	H.G.	Please select
0.60	77.8	Zm.1284.1.S1_at	BE344880	-	-	1e+1	At5g50760	auxin-responsive family protein	S.X.	H.G.	Please select
0.60	77.8	Zm.17115.1.S1_at	CN844978	-	-	1e+0	At5g67490	unknown protein	S.X.	H.G.	Please select
0.57	75.1	Zm.18486.1.A1_at	AW461085	hypothetical protein LOC100276684	-	1e-1	At2g47760	ALG3	S.X.	H.G.	Please select
0.50	65.7	Zm.9384.1.A1_at	BM349149	-	-	6e+0	At4g28170	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.5	97.5	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
4.1	95.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7	95.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM202319	Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.4	94.9	GSM206287	Left pulvinus control total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.2	94.5	GSM202295	Mo17xB73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.0	94.0	GSM162266	Wild type 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
2.9	93.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM202320	B73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
2.8	93.5	GSM202318	B73xMo17 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.53	0	1370	Zm.6431.1.A1_at	CO525297	hypothetical protein LOC100193964	-	3e+0	At5g07600	oleosin / glycine-rich protein	C.G.	S.X.	Please select
0.01	4e-2	40	Zm.4161.2.S1_at	AY105063.1	-	-	3e-1	At3g49845	-	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.18571.1.A1_at	CO518311	Hypothetical protein LOC100217207	-	1e+0	At5g61790	calnexin 1 (CNX1)	C.G.	S.X.	Please select
0.01	5e-1	36	Zm.8593.1.A1_at	BM341502	cystathionin beta synthase protein	-	2e-6	At4g36910	LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2)	C.G.	S.X.	Please select
0.01	5e-1	36	Zm.6509.1.S1_at	CO528105	hypothetical protein LOC100193730	-	5e-11	At1g74640	unknown protein	C.G.	S.X.	Please select
0.01	5e-1	36	Zm.18825.1.A1_at	CO527281	hypothetical protein LOC100194340	-	8e+0	At3g17675	copper ion binding / electron carrier	C.G.	S.X.	Please select
0.01	5e-1	36	Zm.12688.1.S1_at	CF625305	hypothetical protein LOC100279814	-	2e-2	At2g25970	KH domain-containing protein	C.G.	S.X.	Please select
0.01	5e-1	36	Zm.11126.1.S1_at	AA979835	-	-	2e+0	At5g07880	SNAP29	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.4161.3.A1_a_at	CF634106	adhesive/proline-rich protein /// rhodopsin	-	3e-1	At3g49845	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e-2	40	Arabidopsis thaliana	At3g53850	824552	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	7e+0	34	Glycine max	PsAffx.psMA003xN10f_s_at	PsAffx.psMA003xN10f	-	-	3e+0	At5g25220	KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3)	C.G.	S.X.	Please select
0.39	3e-49	196	Hordeum vulgare	Contig5300_at	Contig5300	-	-	3e-1	At2g25970	KH domain-containing protein	C.G.	S.X.	Please select
0.31	7e-124	446	Oryza sativa	Os08g0110900	AK120061.1	-	Hypothetical protein	6e-1	At2g33655	F-box family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.01	4e-1	38	Populus trichocarpa	Ptp.2905.2.A1_at	DN490519	hypothetical protein	-	1e+0	At5g55080	AtRAN4 (Ras-related nuclear protein 4)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.33	3e-38	161	Triticum aestivum	Ta.9516.1.S1_at	CD453990	-	-	1e-3	At2g25970	KH domain-containing protein	C.G.	S.X.	Please select
0.01	4e-1	36	Vitis vinifera	1606928_at	CF405527	hypothetical protein LOC100262242	-	2e-1	At1g23145	RALFL2 (RALF-LIKE 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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