Gene omics information

Query gene ID	Zm.5744.1.A1_at
Gene name	hypothetical protein LOC100272761
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.90	97.0	Zm.5744.1.A1_at	BM332131	hypothetical protein LOC100272761	-	1e+0	At3g14640	CYP72A10	S.X.	H.G.	Please select
0.47	59.9	Zm.7858.1.A1_at	AY108500.1	-	-	3e-3	At1g70940	PIN3 (PIN-FORMED 3)	S.X.	H.G.	Please select
0.45	56.4	Zm.14622.2.S1_at	CO534180	ubiquinone biosynthesis methyltransferase COQ5	-	1e-5	At5g57300	UbiE/COQ5 methyltransferase family protein	S.X.	H.G.	Please select
0.44	55.7	Zm.14411.1.A1_a_at	AI491646	membrane steroid-binding protein 1	-	7e-16	At3g48890	ATMP2	S.X.	H.G.	Please select
0.44	55.7	Zm.12431.1.S1_at	AY106853.1	hypothetical protein LOC100217105	-	4e+0	At4g18400	unknown protein	S.X.	H.G.	Please select
0.41	49.7	Zm.1632.1.S1_at	AY104990.1	-	-	3e-3	At3g09770	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.40	48.5	Zm.6333.1.A1_at	AY109180.1	transaminase/ transferase, transferring nitrogenous groups	-	5e-7	At4g33680	AGD2 (ABERRANT GROWTH AND DEATH 2)	S.X.	H.G.	Please select
0.39	45.6	Zm.2147.1.A1_a_at	BM380613	glycine-rich cell wall structural protein	-	4e-1	At4g01995	unknown protein	S.X.	H.G.	Please select
0.38	44.2	Zm.15804.1.S1_at	CA405323	-	-	9e-22	At1g65430	zinc finger protein-related	S.X.	H.G.	Please select
0.37	42.3	Zm.11547.1.S1_at	CA827895	hypothetical protein LOC100276375	-	1e+1	At5g41520	40S ribosomal protein S10 (RPS10B)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.4	99.2	GSM253267	ZM_4d_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
17.2	99.1	GSM385710	Deep-sowing 10d treatment TIBA, biological rep2	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
16.7	99.1	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
14.2	98.8	GSM253265	ZM_4d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
10.5	98.4	GSM320440	protocol: mRNA - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320438	protocol: mRNA - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM253271	ZM_4.5d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
7.2	97.8	GSM320439	protocol: mRNA - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.53	2e-120	432	Zm.9289.1.A1_at	BM267824	-	-	1e-6	At3g14680	CYP72A14	C.G.	S.X.	Please select
0.04	2e-9	63	Zm.14316.1.S1_at	AY104671.1	hypothetical protein LOC100274358 /// hypothetical protein LOC100277073	-	1e-2	At3g14630	CYP72A9	C.G.	S.X.	Please select
0.04	4e-7	56	Zm.5504.1.A1_at	AY105885.1	hypothetical protein LOC100273181	-	5e+0	At2g28370	-	C.G.	S.X.	Please select
0.04	4e-7	56	Zm.5504.1.S1_at	AY105885.1	-	-	5e+0	At2g28370	-	C.G.	S.X.	Please select
0.06	2e-6	54	Zm.1555.1.A1_at	BM347846	-	-	2e-4	At3g14660	CYP72A13	C.G.	S.X.	Please select
0.05	1e-1	38	Zm.12208.1.A1_at	BM736144	-	-	3e-4	At3g14630	CYP72A9	C.G.	S.X.	Please select
0.06	4e-1	36	Zm.8042.1.A1_at	CA404475	hypothetical protein LOC100217161	-	2e-1	At2g46960	CYP709B1	C.G.	S.X.	Please select
0.01	4e-1	36	Zm.6923.1.S1_at	AY104489.1	-	-	8e-1	At5g01410	RSR4 (REDUCED SUGAR RESPONSE 4)	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.9015.1.A1_a_at	CF634204	-	-	4e-93	At5g50920	CLPC1	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	36	Arabidopsis thaliana	At3g14640	820692	CYP72A10	putative cytochrome P450	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	4e-4	48	Glycine max	Gma.16927.1.S1_at	BU547320	-	-	5e-1	At3g14680	CYP72A14	C.G.	S.X.	Please select
0.56	7e-105	381	Hordeum vulgare	Contig3160_at	Contig3160	-	-	1e-5	At3g14650	CYP72A11	C.G.	S.X.	Please select
0.51	2e-99	365	Oryza sativa	Os01g0627500	AK105255.1	-	Cytochrome P450 family protein	3e-1	At3g14630	CYP72A9	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e-5	52	Populus trichocarpa	PtpAffx.209960.1.S1_s_at	pmrna19645	cytochrome P450 /// cytochrome P450	-	2e-4	At1g11610	CYP71A18	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.48	4e-65	250	Triticum aestivum	Ta.5901.1.S1_x_at	CD903423	-	-	3e-1	At3g14650	CYP72A11	C.G.	S.X.	Please select
0.03	7e-2	38	Vitis vinifera	1619325_at	CF211836	hypothetical protein LOC100263459	-	6e-4	At3g14660	CYP72A13	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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