Gene omics information

Query gene ID	Zm.5729.1.A1_at
Gene name	peptidoglycan binding domain containing protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.9	Zm.5729.1.A1_at	AI637125	peptidoglycan binding domain containing protein	-	3e-23	At4g13670	PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5)	S.X.	H.G.	Please select
0.61	79.5	Zm.2906.1.S1_at	AY110115.1	somatic embryogenesis receptor-like kinase2	-	2e-51	At1g34210	SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2)	S.X.	H.G.	Please select
0.61	79.5	Zm.17172.1.A1_at	AI664919	-	-	2e+0	At1g55675	unknown protein	S.X.	H.G.	Please select
0.59	76.1	Zm.791.1.S1_s_at	AY111675.1	hypothetical protein LOC100280140	-	3e+0	At4g16720	60S ribosomal protein L15 (RPL15A)	S.X.	H.G.	Please select
0.50	65.7	Zm.12678.2.S1_at	CN844593	-	-	8e-11	At3g05030	NHX2 (SODIUM HYDROGEN EXCHANGER 2)	S.X.	H.G.	Please select
0.46	58.4	Zm.13202.1.A1_at	CA403491	hypothetical protein LOC100273129	-	1e-8	At1g56590	clathrin adaptor complexes medium subunit family protein	S.X.	H.G.	Please select
0.38	44.2	Zm.14476.2.A1_at	AY109949.1	Protein disulfide isomerase	-	1e-5	At3g54960	ATPDIL1-3 (PDI-LIKE 1-3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.2	98.5	GSM253263	ZM_4d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
9.2	98.2	GSM253264	ZM_4d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
8.8	98.1	GSM320438	protocol: mRNA - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM253262	ZM_4d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
8.4	98.1	GSM253256	ZM_2d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
7.8	97.9	GSM253276	ZM_8d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
6.8	97.6	GSM320439	protocol: mRNA - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320440	protocol: mRNA - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM253257	ZM_2d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
5.4	97.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	36	Zm.972.1.A1_at	BE186797	hypothetical protein LOC100278676	-	2e+0	At4g04925	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.6274.1.A1_at	AI691216	-	-	9e-16	At5g27840	TOPP8	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.293.1.S1_at	L46398.1	MADS box protein	-	3e-3	At3g61120	AGL13 (AGAMOUS-LIKE 13)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.10261.1.A1_at	BM501576	-	-	4e-20	At5g62410	SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.10261.1.S1_at	AY112633.1	-	-	1e-17	At3g47460	ATSMC2	C.G.	S.X.	Please select
0.01	1e+1	30	ZmAffx.1337.1.S1_at	11990232-85	-	-	6e-94	Atcg01050	-	C.G.	S.X.	Please select
0.02	1e+1	30	Zm.5559.1.A1_at	AI622696	sialyltransferase like protein	-	7e-2	At1g08660	glycosyl transferase family 29 protein / sialyltransferase family protein	C.G.	S.X.	Please select
0.01	1e+1	30	Zm.5048.2.S1_a_at	BM074541	endoplasmin	-	3e-34	At4g24190	SHD (SHEPHERD)	C.G.	S.X.	Please select
0.03	1e+1	30	Zm.4752.1.A1_at	BQ538699	NF-180	-	5e-1	At4g18400	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	3e-23	109	Arabidopsis thaliana	At4g13670	827001	PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5)	F:unfolded protein binding, heat shock protein binding;P:protein folding, metabolic process;C:plastid chromosome, chloroplast thylakoid membrane, chloroplast, nucleoid, chloroplast envelope;BOMPFAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	6e-1	36	Glycine max	Gma.16968.1.S1_at	BF325365	-	-	2e+0	At1g24510	T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative	C.G.	S.X.	Please select
0.16	7e-32	137	Hordeum vulgare	Contig14509_at	Contig14509	-	-	6e-23	At4g13670	PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5)	C.G.	S.X.	Please select
0.18	2e-57	224	Oryza sativa	Os04g0514400	AK108112.1	-	Peptidoglycan binding-like domain containingprotein	4e-1	At5g57070	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	4e-2	40	Populus trichocarpa	PtpAffx.81711.1.A1_at	CV276683	hypothetical protein	-	2e-9	At4g13670	PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	7e+0	32	Triticum aestivum	Ta.5844.1.S1_at	BJ290683	-	-	3e-3	At5g66400	RAB18 (RESPONSIVE TO ABA 18)	C.G.	S.X.	Please select
0.08	1e-4	46	Vitis vinifera	1618616_at	CB343558	hypothetical protein LOC100259626	-	5e-10	At4g13670	PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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