Gene omics information

Query gene ID	Zm.5659.1.A1_at
Gene name	chaperone protein dnaJ 15
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.5659.1.A1_at	CF623486	chaperone protein dnaJ 15	-	6e-42	At1g68370	ARG1 (ALTERED RESPONSE TO GRAVITY 1)	S.X.	H.G.	Please select
0.63	81.1	ZmAffx.1014.1.S1_at	AI881465	-	-	2e-1	At1g59750	ARF1 (AUXIN RESPONSE FACTOR 1)	S.X.	H.G.	Please select
0.57	75.1	Zm.13662.1.A1_at	AY107114.1	-	-	4e+0	At2g40740	WRKY55	S.X.	H.G.	Please select
0.57	75.1	Zm.7791.1.A1_at	BM382756	hypothetical protein LOC100191966	-	3e-8	At4g15960	catalytic/ epoxide hydrolase	S.X.	H.G.	Please select
0.32	33.4	Zm.13194.1.S1_at	CA400651	hypothetical protein LOC100191145	-	2e-1	At1g08570	ACHT4 (ATYPICAL CYS HIS RICH THIOREDOXIN 4)	S.X.	H.G.	Please select
0.30	29.8	Zm.9948.1.A1_at	CB350788	3-N-debenzoyl-2-deoxytaxol N-benzoyltransferase	-	2e+0	At1g54575	unknown protein	S.X.	H.G.	Please select
0.28	28.1	Zm.10517.1.S1_at	CO533971	hypothetical protein LOC100272293	-	3e-16	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	S.X.	H.G.	Please select
0.21	15.5	Zm.4176.1.A1_at	CF635956	DREPP2 protein	-	6e-1	At5g65660	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.7	95.4	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
3.0	94.0	GSM202318	B73xMo17 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
2.9	93.8	GSM202319	Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
2.9	93.8	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
2.9	93.8	GSM202309	Mo17 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
2.6	92.9	GSM202322	B73x Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
2.6	92.9	GSM206332	Lower pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.6	92.9	GSM205369	Mo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.6	92.9	GSM202324	Mo17xB73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
2.6	92.9	GSM206308	Lower pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	1e-4	48	Zm.7919.1.S1_at	BM080426	chaperone protein dnaJ 16	-	4e-3	At1g24120	ARL1 (ARG1-LIKE 1)	C.G.	S.X.	Please select
0.01	4e-1	36	Zm.5579.1.A1_at	CF630296	fumarylacetoacetate hydrolase domain-containing protein 1	-	1e-1	At3g16700	fumarylacetoacetate hydrolase family protein	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.3573.1.A1_at	CF629925	peroxidase 54	-	3e-3	At5g06720	peroxidase, putative	C.G.	S.X.	Please select
0.02	2e+0	34	Zm.1762.1.A1_at	CF027348	-	-	1e-2	At3g43520	unknown protein	C.G.	S.X.	Please select
0.01	6e+0	32	Zm.8042.1.A1_at	CA404475	hypothetical protein LOC100217161	-	2e-1	At2g46960	CYP709B1	C.G.	S.X.	Please select
0.01	6e+0	32	Zm.7727.4.S1_s_at	CF972403	polyubiquitin containing 7 ubiquitin monomers /// ubiquitin /// polyubiquitin	-	2e-102	At4g05320	UBQ10 (POLYUBIQUITIN 10)	C.G.	S.X.	Please select
0.01	6e+0	32	Zm.7727.1.S1_s_at	CK986121	polyubiquitin containing 7 ubiquitin monomers /// ubiquitin /// polyubiquitin	-	5e-129	At5g20620	UBQ4	C.G.	S.X.	Please select
0.01	6e+0	32	Zm.6353.1.S1_a_at	CA399677	heat shock protein STI	-	2e-14	At1g62740	stress-inducible protein, putative	C.G.	S.X.	Please select
0.01	6e+0	32	Zm.6353.2.A1_at	CA404287	-	-	8e-11	At1g62740	stress-inducible protein, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.37	6e-42	173	Arabidopsis thaliana	At1g68370	843166	ARG1 (ALTERED RESPONSE TO GRAVITY 1)	DnaJ-like protein with homology to coiled coils found in cytoskeleton-interacting proteins.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-9	65	Glycine max	GmaAffx.73721.1.S1_at	BU550998	-	-	9e-38	At1g24120	ARL1 (ARG1-LIKE 1)	C.G.	S.X.	Please select
0.62	0	991	Hordeum vulgare	Contig11164_at	Contig11164	-	-	1e-45	At1g68370	ARG1 (ALTERED RESPONSE TO GRAVITY 1)	C.G.	S.X.	Please select
0.63	0	1100	Oryza sativa	Os.14751.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.25	1e-25	119	Populus trichocarpa	PtpAffx.208938.1.S1_s_at	pmrna17713	hypothetical protein	-	9e-158	At1g68370	ARG1 (ALTERED RESPONSE TO GRAVITY 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.59	0	956	Triticum aestivum	Ta.5366.1.S1_at	BJ217165	-	-	8e-38	At1g68370	ARG1 (ALTERED RESPONSE TO GRAVITY 1)	C.G.	S.X.	Please select
0.04	5e-9	61	Vitis vinifera	1607209_at	CB972845	hypothetical protein LOC100252578	-	5e-29	At1g68370	ARG1 (ALTERED RESPONSE TO GRAVITY 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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