CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.5654.1.A1_at

Gene name hypothetical protein LOC100280184

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.0 Zm.5654.1.A1_at BG874013 hypothetical protein LOC100280184 - 5e-1 At5g61200 - S.X. H.G.
0.50 65.7 Zm.18527.1.A1_at CF630266 - - 9e-1 At3g25110 AtFaTA (Arabidopsis FatA acyl-ACP thioesterase) S.X. H.G.
0.44 55.7 Zm.10125.2.A1_x_at BM380760 cytidine/deoxycytidylate deaminase family protein - 4e+0 At2g46230 - S.X. H.G.
0.36 41.3 Zm.2383.1.A1_at BG842498 hypothetical protein LOC100275670 - 5e+0 At2g13820 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein S.X. H.G.
0.33 36.0 ZmAffx.1007.1.S1_at AI881371 - - 1e+1 At2g34570 MEE21 (maternal effect embryo arrest 21) S.X. H.G.
0.27 24.6 Zm.4271.2.A1_at AY103821.1 Isoflavone reductase-like1 - 2e-20 At3g06720 IMPA-1 (IMPORTIN ALPHA ISOFORM 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.3 98.5 GSM205422 Mo17xB73 19 DAP endosperm tissue biological replicate 1 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
7.0 97.7 GSM205429 B73xMo17 19 DAP endosperm tissue biological replicate 2 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
6.8 97.6 GSM205434 Mo17xB73 19 DAP endosperm tissue biological replicate 3 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
6.8 97.6 GSM253246 ZM_12h_Mock_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
6.5 97.5 GSM323172 Zm_SG200Dpep1_24hpi_III GSE12892 Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
6.2 97.4 GSM205433 B73 19 DAP endosperm tissue biological replicate 3 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
6.1 97.4 GSM205436 B73xMo17 19 DAP endosperm tissue biological replicate 3 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
5.9 97.3 GSM323170 Zm_SG200Dpep1_24hpi_I GSE12892 Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
5.7 97.2 GSM258538 DpDf siblings in family segregating for T5-6b DpDf plants; Biological replicate 4 GSE10243 Profiling expression changes caused by a segmental aneuploid in maize
5.7 97.2 GSM205420 Mo17 19 DAP endosperm tissue biological replicate 1 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 9e-1 34 ZmAffx.1209.1.A1_at BG349642 - - 1e+0 At3g49780 ATPSK4 (PHYTOSULFOKINE 4 PRECURSOR) C.G. S.X.
0.02 9e-1 34 ZmAffx.1209.1.S1_at BG349642 - - 1e+0 At3g49780 ATPSK4 (PHYTOSULFOKINE 4 PRECURSOR) C.G. S.X.
0.02 9e-1 34 Zm.11850.1.S1_at CO519970 10-deacetylbaccatin III 10-O-acetyltransferase - 3e+0 At1g76110 high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein C.G. S.X.
0.01 4e+0 32 ZmAffx.1436.1.S1_at 11990232-2 - - 2e-29 Atcg00040 - C.G. S.X.
0.02 4e+0 32 Zm.67.1.S1_at AY104025.1 Actin-depolymerizing factor - 3e-5 At4g25590 ADF7 (actin depolymerizing factor 7) C.G. S.X.
0.01 4e+0 32 Zm.4572.1.S1_at CA399691 hypothetical protein LOC100277482 - 3e-37 At2g42520 DEAD box RNA helicase, putative C.G. S.X.
0.01 4e+0 32 Zm.3580.1.S1_at BQ547735 adhesion regulating molecule conserved region family protein - 9e-4 At2g26590 adhesion regulating molecule family C.G. S.X.
0.02 4e+0 32 Zm.14467.2.A1_at CF624103 14-3-3-like protein - 2e-25 At5g38480 GRF3 (GENERAL REGULATORY FACTOR 3) C.G. S.X.
0.01 4e+0 32 Zm.14467.1.S1_at AY596177.1 14-3-3-like protein - 2e-25 At3g02520 GRF7 (GENERAL REGULATORY FACTOR 7) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e-1 36 Arabidopsis thaliana At5g61200 836241 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBFPAV - - - C.G. S.X.
0.03 8e-1 36 Glycine max GmaAffx.76374.1.S1_s_at BE583790 - - 7e-1 At3g49940 LBD38 (LOB DOMAIN-CONTAINING PROTEIN 38) C.G. S.X.
0.66 0 914 Hordeum vulgare Contig9788_at Contig9788 - - 5e-1 At1g08845 structural constituent of ribosome C.G. S.X.
0.64 0 706 Oryza sativa Os09g0323500 AK071737.1 - Protein of unknown function DUF833 family protein 2e+0 At4g10480 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative C.G. S.X.
0.02 3e+0 34 Populus trichocarpa PtpAffx.214225.1.S1_at pmrna27675 hypothetical protein - 1e-8 At5g11040 - C.G. S.X.
0.64 0 914 Triticum aestivum Ta.10658.1.S1_at BQ166207 - - 6e-1 At1g08845 structural constituent of ribosome C.G. S.X.
0.02 6e-1 34 Vitis vinifera 1612450_at CA811242 hypothetical protein LOC100255989 - 6e-90 At2g06530 VPS2.1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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