CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.5565.1.S2_at

Gene name hypothetical protein LOC100194102

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.74 90.3 Zm.5565.1.S2_at CF631185 hypothetical protein LOC100194102 - 9e-11 At4g39090 RD19 (RESPONSIVE TO DEHYDRATION 19) S.X. H.G.
0.53 69.1 Zm.6763.3.S1_at AY105013.1 - - 1e+0 At3g59845 NADP-dependent oxidoreductase, putative S.X. H.G.
0.51 66.4 Zm.9659.1.A1_at BM350799 - - 4e-1 At1g69510 - S.X. H.G.
0.49 61.9 Zm.3515.1.A1_at CA404890 hypothetical protein LOC100194050 - 1e-6 At2g43180 catalytic S.X. H.G.
0.49 61.9 Zm.7914.1.A1_at AY103800.1 hypothetical protein LOC100277669 - 5e-11 At3g21175 ZML1 (ZIM-LIKE 1) S.X. H.G.
0.48 61.3 Zm.17628.1.S1_at CN845468 - - 6e-17 At2g34560 katanin, putative S.X. H.G.
0.46 58.4 Zm.14133.1.A1_at CF633639 gibberellin receptor GID1L2 - 7e+0 At4g03113 unknown protein S.X. H.G.
0.45 56.4 Zm.3620.1.S1_at AW076176 - - 5e+0 At5g28610 - S.X. H.G.
0.44 55.7 Zm.17084.1.S1_at BE056028 - - 3e+0 At2g40020 - S.X. H.G.
0.43 52.8 Zm.15722.2.A1_at CA404232 hypothetical protein LOC100273877 - 2e+0 At3g06110 MKP2 (MAPK PHOSPHATASE 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.9 95.7 GSM206297 Lower pulvinus 30 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.7 95.4 GSM206292 Upper pulvinus 60 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.6 95.2 GSM206310 Lower pulvinus 60 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.6 95.2 GSM206304 Upper pulvinus 60 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.5 95.1 GSM206327 Upper pulvinus 30 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.4 94.9 GSM206291 Upper pulvinus 30 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.3 94.7 GSM375788 Deep-sowing 10d treatment Control, biological rep1 GSE15048 Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
3.2 94.5 GSM206305 Right pulvinus control polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.2 94.5 GSM206298 Lower pulvinus 60 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.1 94.3 GSM253280 ZM_8d_SG200_3Alu_I GSE10023 Maize gene expression during infection with Ustilago maydis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.94 0 2789 Zm.5565.1.S1_at D45402.1 cysteine protease1 - 9e-11 At4g39090 RD19 (RESPONSIVE TO DEHYDRATION 19) C.G. S.X.
0.03 4e-11 69 Zm.13431.1.A1_at AY110841.1 hypothetical LOC542282 - 2e+0 At3g54940 - C.G. S.X.
0.03 4e-11 69 Zm.13431.1.S1_at AY110841.1 hypothetical LOC542282 - 2e+0 At3g54940 - C.G. S.X.
0.03 1e-5 52 Zm.3701.1.S1_at CF636730 cysteine protease 1 - 1e-2 At5g43060 cysteine proteinase, putative / thiol protease, putative C.G. S.X.
0.01 4e-2 40 Zm.737.1.A1_at D45403.1 cysteine protease - 2e-23 At5g60360 AALP (Arabidopsis aleurain-like protease) C.G. S.X.
0.01 4e-2 40 Zm.737.1.A1_a_at D45403.1 cysteine protease - 2e-23 At5g60360 AALP (Arabidopsis aleurain-like protease) C.G. S.X.
0.01 1e-1 38 Zm.7736.1.S1_at AF019146.1 maize insect resistance2 - 4e-3 At2g34080 cysteine proteinase, putative C.G. S.X.
0.02 1e-1 38 Zm.5987.1.A2_at AF019147.1 cysteine protease component of protease-inhibitor complex - 7e-14 At5g43060 cysteine proteinase, putative / thiol protease, putative C.G. S.X.
0.02 1e-1 38 Zm.5987.1.A2_a_at AF019147.1 cysteine protease 1 /// cysteine protease 1 /// cysteine proteinase Mir3 - 7e-14 At5g43060 cysteine proteinase, putative / thiol protease, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 9e-11 69 Arabidopsis thaliana At4g39090 830064 RD19 (RESPONSIVE TO DEHYDRATION 19) Similar to cysteine proteinases, induced by desiccation but not abscisic acid. Required for RRS1-R mediated resistance against Ralstonia solanacearum. Interacts with the R. solanacearum type III effector PopP2. RD19 associates with PopP2 to form a nuclear complex that is required for activation of the RRS1-R–mediated resistance response. - - - C.G. S.X.
0.10 3e-11 71 Glycine max GmaAffx.15031.1.S1_at BI702292 - - 8e-28 At4g39090 RD19 (RESPONSIVE TO DEHYDRATION 19) C.G. S.X.
0.38 3e-123 442 Hordeum vulgare Contig2402_s_at Contig2402 - - 2e-13 At4g39090 RD19 (RESPONSIVE TO DEHYDRATION 19) C.G. S.X.
0.41 0 928 Oryza sativa Os02g0469600 AK119670.1 - Cysteine proteinase 1 precursor (EC 3.4.22.-) 7e-11 At4g16190 cysteine proteinase, putative C.G. S.X.
0.11 1e-7 59 Populus trichocarpa Ptp.6084.2.S1_s_at DN493788 hypothetical protein - 5e-3 At4g16190 cysteine proteinase, putative C.G. S.X.
0.36 1e-130 468 Triticum aestivum Ta.20554.1.S1_at AJ612508 cysteine protease - 2e-14 At4g39090 RD19 (RESPONSIVE TO DEHYDRATION 19) C.G. S.X.
0.15 8e-21 101 Vitis vinifera 1611656_s_at CF516455 cysteine protease - 1e-45 At4g39090 RD19 (RESPONSIVE TO DEHYDRATION 19) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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