Gene omics information

Query gene ID	Zm.5565.1.S1_at
Gene name	cysteine protease1
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	88.2	Zm.5565.1.S1_at	D45402.1	cysteine protease1	-	9e-11	At4g39090	RD19 (RESPONSIVE TO DEHYDRATION 19)	S.X.	H.G.	Please select
0.56	74.4	Zm.1013.2.A1_at	CK347213	nucleic acid binding protein	-	4e-1	At4g21450	vesicle-associated membrane family protein / VAMP family protein	S.X.	H.G.	Please select
0.52	67.3	Zm.17166.1.A1_at	CK370745	-	-	4e+0	At5g65730	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	S.X.	H.G.	Please select
0.50	65.7	Zm.9311.1.A1_a_at	BG842505	hypothetical protein LOC100274965	-	5e+0	At2g29180	unknown protein	S.X.	H.G.	Please select
0.43	52.8	Zm.9236.1.A1_at	BM339258	-	-	8e-2	At3g01860	unknown protein	S.X.	H.G.	Please select
0.40	48.5	Zm.13199.1.S1_at	CA404238	hypothetical protein LOC100191826	-	2e-7	At3g17465	RPL3P (RIBOSOMAL PROTEIN L3 PLASTID)	S.X.	H.G.	Please select
0.32	33.4	Zm.5362.1.A1_at	AW498436	hypothetical protein LOC100193109	-	1e-1	At1g79860	ROPGEF12 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 12)	S.X.	H.G.	Please select
0.31	31.6	Zm.13185.1.A1_at	AY104045.1	-	-	1e-22	At3g13060	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.1	95.9	GSM253274	ZM_8d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
3.8	95.5	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis
3.5	95.1	GSM253278	ZM_8d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
3.4	94.9	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
3.4	94.9	GSM253275	ZM_8d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
3.3	94.7	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
3.3	94.7	GSM253279	ZM_8d_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
3.1	94.3	GSM253262	ZM_4d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
3.1	94.3	GSM253263	ZM_4d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
3.1	94.3	GSM253266	ZM_4d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.94	0	2789	Zm.5565.1.S2_at	CF631185	hypothetical protein LOC100194102	-	9e-11	At4g39090	RD19 (RESPONSIVE TO DEHYDRATION 19)	C.G.	S.X.	Please select
0.03	4e-11	69	Zm.13431.1.A1_at	AY110841.1	hypothetical LOC542282	-	2e+0	At3g54940	-	C.G.	S.X.	Please select
0.03	4e-11	69	Zm.13431.1.S1_at	AY110841.1	hypothetical LOC542282	-	2e+0	At3g54940	-	C.G.	S.X.	Please select
0.03	1e-5	52	Zm.3701.1.S1_at	CF636730	cysteine protease 1	-	1e-2	At5g43060	cysteine proteinase, putative / thiol protease, putative	C.G.	S.X.	Please select
0.01	4e-2	40	Zm.737.1.A1_at	D45403.1	cysteine protease	-	2e-23	At5g60360	AALP (Arabidopsis aleurain-like protease)	C.G.	S.X.	Please select
0.01	4e-2	40	Zm.737.1.A1_a_at	D45403.1	cysteine protease	-	2e-23	At5g60360	AALP (Arabidopsis aleurain-like protease)	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.7736.1.S1_at	AF019146.1	maize insect resistance2	-	4e-3	At2g34080	cysteine proteinase, putative	C.G.	S.X.	Please select
0.02	1e-1	38	Zm.5987.1.A2_at	AF019147.1	cysteine protease component of protease-inhibitor complex	-	7e-14	At5g43060	cysteine proteinase, putative / thiol protease, putative	C.G.	S.X.	Please select
0.02	1e-1	38	Zm.5987.1.A2_a_at	AF019147.1	cysteine protease 1 /// cysteine protease 1 /// cysteine proteinase Mir3	-	7e-14	At5g43060	cysteine proteinase, putative / thiol protease, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	9e-11	69	Arabidopsis thaliana	At4g39090	830064	RD19 (RESPONSIVE TO DEHYDRATION 19)	Similar to cysteine proteinases, induced by desiccation but not abscisic acid. Required for RRS1-R mediated resistance against Ralstonia solanacearum. Interacts with the R. solanacearum type III effector PopP2. RD19 associates with PopP2 to form a nuclear complex that is required for activation of the RRS1-R–mediated resistance response.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	3e-11	71	Glycine max	GmaAffx.15031.1.S1_at	BI702292	-	-	8e-28	At4g39090	RD19 (RESPONSIVE TO DEHYDRATION 19)	C.G.	S.X.	Please select
0.38	3e-123	442	Hordeum vulgare	Contig2402_s_at	Contig2402	-	-	2e-13	At4g39090	RD19 (RESPONSIVE TO DEHYDRATION 19)	C.G.	S.X.	Please select
0.41	0	928	Oryza sativa	Os02g0469600	AK119670.1	-	Cysteine proteinase 1 precursor (EC 3.4.22.-)	7e-11	At4g16190	cysteine proteinase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	1e-7	59	Populus trichocarpa	Ptp.6084.2.S1_s_at	DN493788	hypothetical protein	-	5e-3	At4g16190	cysteine proteinase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.36	1e-130	468	Triticum aestivum	Ta.20554.1.S1_at	AJ612508	cysteine protease	-	2e-14	At4g39090	RD19 (RESPONSIVE TO DEHYDRATION 19)	C.G.	S.X.	Please select
0.15	8e-21	101	Vitis vinifera	1611656_s_at	CF516455	cysteine protease	-	1e-45	At4g39090	RD19 (RESPONSIVE TO DEHYDRATION 19)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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