Gene omics information

Query gene ID	Zm.5542.1.S1_at
Gene name	Hypothetical protein LOC100193112
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	65.7	Zm.5542.1.S1_at	CO518213	Hypothetical protein LOC100193112	-	7e-4	At3g15140	exonuclease family protein	S.X.	H.G.	Please select
0.71	88.2	Zm.3832.1.S1_at	AY112267.1	actin-depolymerizing factor	-	1e-13	At4g25590	ADF7 (actin depolymerizing factor 7)	S.X.	H.G.	Please select
0.57	75.1	Zm.3058.1.A1_at	BM338821	glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform	-	6e-36	At3g27300	G6PD5 (glucose-6-phosphate dehydrogenase 5)	S.X.	H.G.	Please select
0.50	65.7	Zm.6743.3.S1_at	AY104585.1	hypothetical protein LOC100216801	-	2e-10	At3g02420	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.9017.1.A1_at	BM338660	Hypothetical protein LOC100193460	-	2e+0	At1g64290	F-box protein-related	S.X.	H.G.	Please select
0.44	55.7	Zm.4613.1.A1_at	CK826972	-	-	5e-1	At1g73770	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
29.0	99.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.9	99.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.3	99.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.4	99.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.7	99.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.7	99.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.9	99.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.7	99.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.8	99.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM320465	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.97	0	2484	Zm.5542.1.A1_at	AI622571	hypothetical protein LOC100193112	-	7e-4	At3g15140	exonuclease family protein	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.6054.2.A1_at	AY104332.1	-	-	4e-2	At1g09550	pectinacetylesterase, putative	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.6054.2.S1_at	AY104332.1	-	-	6e-4	At2g41740	VLN2 (VILLIN 2)	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.3827.1.S1_at	CA829504	-	-	4e-3	At4g00090	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.19186.1.S1_at	AW566355	hypothetical protein LOC100192811	-	8e-1	At1g73177	BNS (BONSAI)	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.13244.1.S1_at	AF453838.1	satase isoform II	-	4e-2	At5g23680	sterile alpha motif (SAM) domain-containing protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.3567.2.S1_a_at	AY061965.1	fertilization independent endosperm2	-	3e-28	At3g20740	FIE (FERTILIZATION-INDEPENDENT ENDOSPERM)	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.703.1.A1_at	AY111840.1	-	-	1e-1	At1g18730	NDF6 (NDH DEPENDENT FLOW 6)	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.6649.1.S1_at	CK370002	hypothetical protein LOC100191356	-	8e-4	At3g05290	PNC1 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	7e-4	46	Arabidopsis thaliana	At3g15140	820745	exonuclease family protein	F:exonuclease activity;P:unknown;C:intracellular, chloroplast;MOPBF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.16	1e-9	65	Glycine max	GmaAffx.64955.1.S1_at	BE820421	-	-	6e-17	At3g15140	exonuclease family protein	C.G.	S.X.	Please select
0.05	2e-14	79	Hordeum vulgare	Contig20723_at	Contig20723	-	-	5e+0	At3g23805	RALFL24 (ralf-like 24)	C.G.	S.X.	Please select
0.13	3e-97	357	Oryza sativa	Os06g0353400	AK120298.1	-	Conserved hypothetical protein	2e+0	At5g13850	NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e-3	44	Populus trichocarpa	PtpAffx.210076.1.S1_at	pmrna19850	hypothetical protein	-	3e-11	At3g15140	exonuclease family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.33	2e-65	250	Triticum aestivum	TaAffx.92145.1.S1_at	BQ743274	-	-	6e-3	At4g25720	QC (GLUTAMINYL CYCLASE)	C.G.	S.X.	Please select
0.02	1e-2	40	Vitis vinifera	1615863_at	CB971724	hypothetical protein LOC100241130	-	2e-1	At5g18690	AGP25 (ARABINOGALACTAN PROTEINS 25)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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