CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.5542.1.A1_at

Gene name hypothetical protein LOC100193112

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 92.1 Zm.5542.1.A1_at AI622571 hypothetical protein LOC100193112 - 7e-4 At3g15140 exonuclease family protein S.X. H.G.
0.73 89.9 Zm.3971.1.S1_at AI820113 hypothetical protein LOC100275101 - 5e-1 At5g49280 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.60 77.8 Zm.15721.1.S1_at CD440481 alkaline alpha galactosidase 2 - 1e+0 At2g44790 UCC2 (UCLACYANIN 2) S.X. H.G.
0.55 71.6 Zm.12231.1.A1_at CO521886 - - 6e-6 At5g55530 C2 domain-containing protein S.X. H.G.
0.40 48.5 Zm.16513.2.A1_at AY103587.1 hypothetical protein LOC100191561 - 0 At5g09810 ACT7 (ACTIN 7) S.X. H.G.
0.13 6.8 Zm.7934.1.S1_at BM080498 hypothetical protein LOC100194349 - 6e+0 At3g01323 unknown protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.4 97.5 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4 96.2 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6 95.2 GSM253246 ZM_12h_Mock_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
3.5 95.1 GSM253244 ZM_12h_Mock_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
3.4 94.9 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3 94.7 GSM253248 ZM_12h_SG200_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
3.2 94.5 GSM253251 ZM_24h_Mock_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
3.2 94.5 GSM253250 ZM_24h_Mock_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
3.1 94.3 GSM253247 ZM_12h_SG200_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
3.0 94.0 GSM253249 ZM_12h_SG200_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.97 0 2484 Zm.5542.1.S1_at CO518213 Hypothetical protein LOC100193112 - 7e-4 At3g15140 exonuclease family protein C.G. S.X.
0.01 3e-1 36 Zm.6054.2.A1_at AY104332.1 - - 4e-2 At1g09550 pectinacetylesterase, putative C.G. S.X.
0.01 3e-1 36 Zm.6054.2.S1_at AY104332.1 - - 6e-4 At2g41740 VLN2 (VILLIN 2) C.G. S.X.
0.01 3e-1 36 Zm.3827.1.S1_at CA829504 - - 4e-3 At4g00090 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.01 3e-1 36 Zm.19186.1.S1_at AW566355 hypothetical protein LOC100192811 - 8e-1 At1g73177 BNS (BONSAI) C.G. S.X.
0.01 3e-1 36 Zm.13244.1.S1_at AF453838.1 satase isoform II - 4e-2 At5g23680 sterile alpha motif (SAM) domain-containing protein C.G. S.X.
0.01 1e+0 34 Zm.3567.2.S1_a_at AY061965.1 fertilization independent endosperm2 - 3e-28 At3g20740 FIE (FERTILIZATION-INDEPENDENT ENDOSPERM) C.G. S.X.
0.01 4e+0 32 Zm.703.1.A1_at AY111840.1 - - 1e-1 At1g18730 NDF6 (NDH DEPENDENT FLOW 6) C.G. S.X.
0.01 4e+0 32 Zm.6649.1.S1_at CK370002 hypothetical protein LOC100191356 - 8e-4 At3g05290 PNC1 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 1) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 7e-4 46 Arabidopsis thaliana At3g15140 820745 exonuclease family protein F:exonuclease activity;P:unknown;C:intracellular, chloroplast;MOPBF - - - C.G. S.X.
0.16 1e-9 65 Glycine max GmaAffx.64955.1.S1_at BE820421 - - 6e-17 At3g15140 exonuclease family protein C.G. S.X.
0.05 2e-14 79 Hordeum vulgare Contig20723_at Contig20723 - - 5e+0 At3g23805 RALFL24 (ralf-like 24) C.G. S.X.
0.23 3e-97 357 Oryza sativa Os06g0353400 AK120298.1 - Conserved hypothetical protein 2e+0 At5g13850 NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3) C.G. S.X.
0.06 4e-3 44 Populus trichocarpa PtpAffx.210076.1.S1_at pmrna19850 hypothetical protein - 3e-11 At3g15140 exonuclease family protein C.G. S.X.
0.33 2e-65 250 Triticum aestivum TaAffx.92145.1.S1_at BQ743274 - - 6e-3 At4g25720 QC (GLUTAMINYL CYCLASE) C.G. S.X.
0.02 1e-2 40 Vitis vinifera 1615863_at CB971724 hypothetical protein LOC100241130 - 2e-1 At5g18690 AGP25 (ARABINOGALACTAN PROTEINS 25) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage