CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.5517.1.A1_at

Gene name hypothetical protein LOC100273563

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.0 Zm.5517.1.A1_at BE051194 hypothetical protein LOC100273563 - 2e-1 At1g15740 leucine-rich repeat family protein S.X. H.G.
0.56 74.4 Zm.6054.1.A1_at AW497492 - - 3e+0 At5g25490 zinc finger (Ran-binding) family protein S.X. H.G.
0.50 65.7 Zm.14489.1.S1_at BQ527929 MFS18 protein - 1e+0 At5g67510 60S ribosomal protein L26 (RPL26B) S.X. H.G.
0.40 48.5 Zm.796.1.A1_a_at CK370719 - - 3e-9 At5g53140 protein phosphatase 2C, putative / PP2C, putative S.X. H.G.
0.40 48.5 Zm.3353.1.A1_at AI947755 toc64 - 4e-1 At3g09120 unknown protein S.X. H.G.
0.36 41.3 Zm.12244.2.S1_x_at AI668243 - - 9e-1 At5g46940 invertase/pectin methylesterase inhibitor family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.2 98.2 GSM253281 ZM_8d_SG200_3Alu_II GSE10023 Maize gene expression during infection with Ustilago maydis
8.7 98.1 GSM253282 ZM_8d_SG200_3Alu_III GSE10023 Maize gene expression during infection with Ustilago maydis
8.1 98.0 GSM253280 ZM_8d_SG200_3Alu_I GSE10023 Maize gene expression during infection with Ustilago maydis
6.7 97.6 GSM320442 protocol: mRNA - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7 97.6 GSM320445 protocol: mRNA - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6 97.6 GSM320446 protocol: mRNA - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9 97.3 GSM206305 Right pulvinus control polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
5.6 97.1 GSM385707 Deep-sowing 10d treatment IAA, biological rep1 GSE15371 Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
5.5 97.1 GSM320441 protocol: mRNA - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9 96.7 GSM385708 Deep-sowing 10d treatment IAA, biological rep2 GSE15371 Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 4e-38 159 Zm.17573.1.A1_at CF630261 regulatory subunit - 8e+0 At5g54640 RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5) C.G. S.X.
0.01 4e-1 36 Zm.7605.1.S1_at AY106015.1 30S ribosomal protein S17 - 4e-11 At1g49400 emb1129 (embryo defective 1129) C.G. S.X.
0.01 4e-1 36 Zm.6102.1.A1_at BM347836 hypothetical protein LOC100192466 - 1e-7 At1g13180 DIS1 (DISTORTED TRICHOMES 1) C.G. S.X.
0.02 4e-1 36 Zm.16562.1.S1_at CO530845 - - 6e-3 At2g17220 protein kinase, putative C.G. S.X.
0.02 1e+0 34 Zm.8108.1.A1_at BM381912 - - 4e-4 At5g15080 protein kinase, putative C.G. S.X.
0.01 1e+0 34 Zm.3745.1.A1_at CF630213 - - 2e-10 At4g14950 unknown protein C.G. S.X.
0.01 1e+0 34 Zm.1295.1.A1_at BG841275 hypothetical protein LOC100277498 - 3e-1 At2g21060 ATGRP2B (GLYCINE-RICH PROTEIN 2B) C.G. S.X.
0.01 6e+0 32 Zm.9196.1.S1_at BE510176 hypothetical protein LOC100217073 - 4e-21 At2g03120 ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE) C.G. S.X.
0.01 6e+0 32 Zm.7417.2.A1_a_at CA400335 protein BRE - 2e+0 Atmg00730 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 38 Arabidopsis thaliana At1g15740 838143 leucine-rich repeat family protein F:protein binding;P:unknown;C:cellular_component unknown;MPBOFVA - - - C.G. S.X.
0.06 1e+0 36 Glycine max GmaAffx.91328.1.S1_at CF807053 - - 2e-5 At1g15740 leucine-rich repeat family protein C.G. S.X.
0.38 4e-140 498 Hordeum vulgare Contig7030_at Contig7030 - - 9e-1 At1g15740 leucine-rich repeat family protein C.G. S.X.
0.54 3e-122 440 Oryza sativa Os04g0503500 AK099404.1 - Leucine-rich repeat, cysteine-containing subtypecontaining protein 5e-3 At1g15740 leucine-rich repeat family protein C.G. S.X.
0.05 8e-5 50 Populus trichocarpa PtpAffx.32004.2.S1_a_at AJ778820 hypothetical protein - 9e-10 At1g15740 leucine-rich repeat family protein C.G. S.X.
0.54 0 847 Triticum aestivum Ta.9255.1.S1_a_at CK208205 - - 2e-2 At1g15740 leucine-rich repeat family protein C.G. S.X.
0.01 4e+0 32 Vitis vinifera 1615130_at CB974807 hypothetical protein LOC100243401 - 9e-5 At5g33370 GDSL-motif lipase/hydrolase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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