Gene omics information

Query gene ID	Zm.5515.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.74	90.3	Zm.5515.1.A1_at	CF631927	-	-	3e+0	At2g01580	unknown protein	S.X.	H.G.	Please select
0.44	55.7	Zm.18544.1.A1_at	CK826617	-	-	1e-1	At4g24900	unknown protein	S.X.	H.G.	Please select
0.38	44.2	Zm.4984.1.S1_at	AY108203.1	diacylglycerol kinase	-	2e-11	At4g30340	ATDGK7 (Diacylglycerol kinase 7)	S.X.	H.G.	Please select
0.37	42.3	Zm.4703.1.A1_at	BM079272	hypothetical protein LOC100279234	-	2e+1	At5g41860	unknown protein	S.X.	H.G.	Please select
0.33	36.0	Zm.17751.1.S1_at	CK371154	-	-	1e+0	At1g14210	ribonuclease T2 family protein	S.X.	H.G.	Please select
0.33	36.0	Zm.12667.1.S1_at	CA831456	hypothetical protein LOC100276149 /// hypothetical protein LOC100278740	-	1e+0	At1g70895	CLE17 (CLAVATA3/ESR-RELATED 17)	S.X.	H.G.	Please select
0.32	33.4	Zm.4049.1.A1_at	AI834098	hypothetical protein LOC100279705	-	1e+0	At5g14130	peroxidase, putative	S.X.	H.G.	Please select
0.27	24.6	Zm.15748.1.S1_at	CD446789	hypothetical protein LOC100280178	-	4e+0	At3g50870	MNP (MONOPOLE)	S.X.	H.G.	Please select
0.24	19.8	Zm.18283.1.A1_at	BG841297	hypothetical protein LOC100217202 /// hypothetical protein LOC100217213	-	5e+0	At5g49540	unknown protein	S.X.	H.G.	Please select
0.24	19.8	Zm.13856.1.S1_at	AF439727.1	formate tetrahyrofolate ligase	-	9e-58	At1g50480	THFS (10-FORMYLTETRAHYDROFOLATE SYNTHETASE)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.8	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM206307	Lower pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.0	97.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM206305	Right pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	9e-2	36	Zm.2897.1.S1_at	AW191763	hypothetical protein LOC100275609	-	6e-1	At1g08465	YAB2 (YABBY2)	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.3546.1.S1_at	CA405247	F-box domain containing protein	-	3e+0	At5g10780	-	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.2042.1.A1_a_at	AY104437.1	protein arginine N-methyltransferase 1	-	2e-6	At4g29510	PRMT11 (ARGININE METHYLTRANSFERASE 11)	C.G.	S.X.	Please select
0.03	6e+0	30	Zm.8506.1.S1_at	CF014984	hypothetical protein LOC100272332	-	1e+0	At3g17300	-	C.G.	S.X.	Please select
0.03	6e+0	30	Zm.4180.1.S1_at	CD964540	hypothetical protein LOC100275988	-	2e+0	At5g35530	40S ribosomal protein S3 (RPS3C)	C.G.	S.X.	Please select
0.01	6e+0	30	Zm.3665.1.S1_at	D88451.1	aldehyde oxidase	-	4e-2	At3g43600	AAO2 (ALDEHYDE OXIDASE 2)	C.G.	S.X.	Please select
0.01	6e+0	30	Zm.3507.1.A1_at	CK347589	-	-	1e-18	At4g11030	long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative	C.G.	S.X.	Please select
0.02	6e+0	30	Zm.2831.1.A1_at	AW066991	-	-	2e+0	At3g60760	unknown protein	C.G.	S.X.	Please select
0.02	6e+0	30	Zm.19338.1.S1_at	CO520504	-	-	4e-2	At1g30870	cationic peroxidase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At2g01580	814687	unknown protein	F:unknown;P:unknown;C:unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	1e+0	34	Glycine max	GmaAffx.43300.1.S1_at	AI442892	-	-	2e-1	At2g30390	FC2 (FERROCHELATASE 2)	C.G.	S.X.	Please select
0.05	6e+0	30	Hordeum vulgare	HVSMEh0084N15r2_s_at	HVSMEh0084N15r2	-	-	6e+0	At1g48510	cytochrome c oxidase assembly protein surfeit-related	C.G.	S.X.	Please select
0.02	7e+0	32	Oryza sativa	Os03g0120200	AK121787.1	-	Remorin, C-terminal region domain containingprotein	8e-7	At2g02170	remorin family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+1	30	Populus trichocarpa	PtpAffx.71195.1.S1_at	BU820707	hypothetical protein	-	8e-16	At2g41540	GPDHC1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e+0	32	Triticum aestivum	TaAffx.8371.1.S1_at	CA626561	-	-	4e+0	At5g04760	myb family transcription factor	C.G.	S.X.	Please select
0.04	1e+0	32	Vitis vinifera	1619898_at	BQ797827	-	-	1e-1	At1g66980	protein kinase family protein / glycerophosphoryl diester phosphodiesterase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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