Gene omics information

Query gene ID Zm.5486.1.A1_at
Gene name
Organism Zea mays


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.5571.6Zm.5486.1.A1_atAI629867--1e-1At5g20280ATSPS1F (sucrose phosphate synthase 1F)S.X.H.G.
0.8094.0Zm.5805.2.A1_a_atAI649736filamentation temperature-sensitive H 2A /// filamentation temperature-sensitive H 2B-2e-56At1g06430FTSH8S.X.H.G.
0.7389.9Zm.1515.1.A1_atBM380375P-protein-5e-4At3g07630ADT2 (arogenate dehydratase 2)S.X.H.G.
0.4048.5Zm.7056.12.S1_atAI746152--2e-1At5g3974060S ribosomal protein L5 (RPL5B)S.X.H.G.
0.3844.2Zm.3565.1.A1_atAW042565--5e-13At1g54590splicing factor Prp18 family proteinS.X.H.G.
0.3844.2Zm.803.1.A1_atCF625813hypothetical protein LOC100274731-6e-1At5g25210unknown proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
9.298.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.398.0GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.297.8GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.897.6GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.097.3GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.797.2GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.797.2GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.196.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.296.0GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.595.1GSM320441protocol: mRNA - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.076e-2097Zm.3748.1.S1_atCF624336--4e-23At5g11110ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F)C.G.S.X.
0.023e+032Zm.9811.1.A1_atBM351496--1e+0At3g50250unknown proteinC.G.S.X.
0.023e+032Zm.8142.1.A1_atBM080424hypothetical protein LOC100275043-4e-4At1g05420OFP12 (OVATE FAMILY PROTEIN 12)C.G.S.X.
0.023e+032Zm.16218.1.A1_atCF626753hypothetical protein LOC100274565-1e-1At1g79310AtMC7 (metacaspase 7)C.G.S.X.
0.023e+032Zm.12315.2.A1_atBM334630hypothetical protein LOC100192034-5e-1At3g11650NHL2C.G.S.X.
0.013e+032Zm.112.1.A1_atBQ538367HOX1B protein-2e-5At3g19510HAT3.1C.G.S.X.
0.011e+130ZmAffx.5.1.S1_atAY372246.1cellulose synthase catalytic subunit 12-4e-26At5g17420IRX3 (IRREGULAR XYLEM 3)C.G.S.X.
0.011e+130Zm.7166.1.A1_atAF200532.1cellulose synthase8-3e-36At4g39350CESA2 (CELLULOSE SYNTHASE A2)C.G.S.X.
0.021e+130Zm.6814.1.A1_atCA402390--2e+0At1g24580zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.101e-138Arabidopsis thalianaAt5g20280832150ATSPS1F (sucrose phosphate synthase 1F)Encodes a protein with putative sucrose-phosphate synthase activity. When the gene was expressed in transgenic tobacco plants, a clear trend for increased SPS activity was noted.---C.G.S.X.
0.096e-446Glycine maxGma.2097.1.S1_atAW309489--2e-76At5g20280ATSPS1F (sucrose phosphate synthase 1F)C.G.S.X.
0.330734Hordeum vulgareContig7277_atContig7277--3e-8At5g11110ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F)C.G.S.X.
0.351e-122440Oryza sativaOs06g0643800AK071732.1-Sucrose-phosphate synthase 7 (EC 2.4.1.14)(Fragment)1e-2At2g14860peroxisomal membrane protein 22 kDa, putativeC.G.S.X.
0.101e-552Populus trichocarpaPtpAffx.141421.1.S1_atDN500621hypothetical protein-1e-158At5g20280ATSPS1F (sucrose phosphate synthase 1F)C.G.S.X.
0.590730Triticum aestivumTa.20568.1.S1_atBT009472.1sucrose-phosphate synthase 9-5e-2At4g10120ATSPS4FC.G.S.X.
0.081e-1065Vitis vinifera1612883_atCF213322hypothetical protein LOC100241955-2e-95At5g20280ATSPS1F (sucrose phosphate synthase 1F)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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